PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007216
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 517aa    MW: 59131.7 Da    PI: 4.7952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007216genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1189e-37161443127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  +G+rFhP+d+elv++yLk+k+ g+++     ++ev+iy ++Pw+L  + +++ +ew  y F++rd ky ++kr nr+tk+gyWk tgk ++v+ k ++
  Lus10007216  16 VGYRFHPRDDELVDYYLKRKILGEDIGD-VSLDEVKIYCSDPWELLGRSNNQLDEWvfYCFCPRDYKYVNSKRCNRTTKNGYWKPTGKIRDVKGKkTK 112
                  7************************877.45**************877777777998899********************************998677 PP

          NAM  98 elvglkktLvfykg..rapkgektdWvmheyr 127
                  +++g+kktLvfyk+  + pkg  t  vmhey+
  Lus10007216 113 KKIGTKKTLVFYKKdkEFPKGLITPYVMHEYE 144
                  88**********7622668999*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.93214165IPR003441NAC domain
SuperFamilySSF1019411.57E-3914165IPR003441NAC domain
PfamPF023651.8E-2216144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MENVVESAAR SSDEVVGYRF HPRDDELVDY YLKRKILGED IGDVSLDEVK IYCSDPWELL  60
GRSNNQLDEW VFYCFCPRDY KYVNSKRCNR TTKNGYWKPT GKIRDVKGKK TKKKIGTKKT  120
LVFYKKDKEF PKGLITPYVM HEYEYMADPN SLDKEKFTLC KLKRKRDKRI PKNTNTTNHH  180
SSTICLEASH FGDEISPLLR GERCYSIQEI TCESSEASHV LGSEFGNQMS LMEMREGNDG  240
LEQESHEYSE ANCLKSSDLA SPVLLEEVTN GYQVGNQGPW EYNKSNCLLA SDLQSPVSPP  300
KDEGCLTPST LESHSVWDND GQGQVVDSIA RIHQHSNIQI DASCHGIHQH SNKQIDASCH  360
EVEPCFSGTP TPNFEYQKQM EMPTLISAID CIDWVNLLFP ERDFLLYKLM RKSSSEGSND  420
DDEDDEEVEE HIEGVETSSG MSCNFDNPNT PFGNHPLSTP TANLDHNELQ LQAYLDRFAR  480
YDERSYNLNS VMNMEDVQTN YQIRNHELSW TVAFDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-261716718170Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168LKRKRDKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100072160.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-28NAC domain containing protein 20