PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007204
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 377aa    MW: 42387.2 Da    PI: 4.4681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007204genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.55.7e-15141671128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee..vikev..diykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknra......... 77 
                  lp+G+ F+Pt+++lv++yL ++++g +l+ +    ++ +  d+y + ePw+L +++++       + +++y  +k ++k + ++ k+++         
  Lus10007204  14 LPVGCCFKPTEKQLVSHYLFNHISGLPLQNHPfcPVPVFfgDLYGSeEPWELWHRFQSqnnsglsTGDDVYLITKLKQKVSGKQLKQKKkmagssnkq 111
                  799************************666443224444469998768****754444222233233477999998888875554444347899**** PP

          NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         t+ g W  + kd e+ + ++  vg++k + +  +r++k ++  W+  ey++
  Lus10007204 112 yydrlvgTSGGNWDRSDKDYEIEVDRDDFVGIRKKFSYK-NRESK-QHGLWLFSEYSI 167
                  *******99***************99999********98.44444.699*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-1312175IPR003441NAC domain
PROSITE profilePS5100516.48214186IPR003441NAC domain
PfamPF023654.4E-915167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGPNHQSSET VDLLPVGCCF KPTEKQLVSH YLFNHISGLP LQNHPFCPVP VFFGDLYGSE  60
EPWELWHRFQ SQNNSGLSTG DDVYLITKLK QKVSGKQLKQ KKKMAGSSNK QYYDRLVGTS  120
GGNWDRSDKD YEIEVDRDDF VGIRKKFSYK NRESKQHGLW LFSEYSISYD GGKTCSEDVI  180
CILKDHRKSD ESATTKKRKF EQVPKLDDGA TISATLMQMQ TEEMVPISFD FSMPSPPNVL  240
DGSSVGDIIH NNELLPTIPS HHSVDDRSGS ESGQLDIDDI YIDDDSIWAL LEDDKEEPEN  300
SGLLEQVQSS IIKPVHQGPL DLDLPVTSFS SNPSDMFLDG EFLQRISSPS YIPCSLASDF  360
VLEIDPFSDF PDSFQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8857101e-139HQ885710.1 Linum usitatissimum clone Contig1615 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100072040.0(Linum usitatissimum)