PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 523aa MW: 54781 Da PI: 8.3333 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lus10007168 65 FVCEICSKGFQRDQNLQLHRRGH 87 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.7e-05 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Lus10007168 141 WKCERCTKKYAVQSDWKAHMKTC 163 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-5 | 64 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.95E-7 | 64 | 87 | No hit | No description |
PROSITE profile | PS50157 | 10.887 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 106 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.5E-5 | 129 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.95E-7 | 136 | 162 | No hit | No description |
SMART | SM00355 | 91 | 141 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MAEVENSSQV TVSGAALSGE ANSVSSFGNQ PTTTTKKKRN LPGMPDPEAE VIALSPVSLL 60 ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRSSKE LRKRVYVCPE PSCVHHDPAR 120 ALGDLTGIKK HFCRKHGEKK WKCERCTKKY AVQSDWKAHM KTCGTREYKC DCGTLFSRRD 180 SFITHRAFCD ALAEESIRSN NPPLTVTNNN NPSPSPTVVV SPPPPPHTPS TTVISPGNSV 240 QSSENPAALA SPPATTAAGV TNTSSTCTAS TSNVFASIFA SQTTAPSTIP PSADNSAGVT 300 NTSSTCTAST SNVFASIFAS QTTAPSTIPP SADNSSPSAS AGVAGVGSFS DLLQSFTPSD 360 CPLTITMIEP PSLSLSQPPI NYLSTTAPSS ALLGMGGRGG QEHYGHATTM SATALLQKAA 420 QMGSTTSNQS FLRGLGLQMS PSSTTHSQDT NGNRHPWEVK PESGGLGLGL GLSYGPTTLD 480 LLGLGLGSSP ALLTSYGHGF NIGRSSEETW DNNNTGGAGK EH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-36 | 137 | 210 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 7e-36 | 137 | 210 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007168 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534758.1 | 1e-166 | protein indeterminate-domain 2 isoform X2 | ||||
Swissprot | Q9LVQ7 | 1e-128 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A067L2Z9 | 1e-163 | A0A067L2Z9_JATCU; Uncharacterized protein | ||||
STRING | Lus10007168 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-116 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10007168 |
Publications ? help Back to Top | |||
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