PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24506.1 Da PI: 10.1205 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 7.7e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++ +nrqvtfskRr+g++KKA+ELS+LCda++a+i+fs+t+kly +ss Lus10007100 10 RIDDRTNRQVTFSKRRTGLIKKAKELSILCDAQIALIVFSTTNKLYQFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 82.1 | 1.2e-27 | 80 | 170 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+akLk+e+++L + +R+l+Ge+++ Ls+++Lq+Le+qLe slk iR kK++ +++qi l k ++ een +L+k++ Lus10007100 80 VNPASEIKFWQKEAAKLKRELQSLNEYHRQLMGEEVSGLSVRDLQNLETQLEISLKAIRLKKHNTMTDQITALTAKGNQCYEENIQLHKQF 170 3678899*********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.543 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.10E-40 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-31 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.567 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRGKTVIRR IDDRTNRQVT FSKRRTGLIK KAKELSILCD AQIALIVFST TNKLYQFSST 60 SMMSIIDRYT RQKEAHSQPV NPASEIKFWQ KEAAKLKREL QSLNEYHRQL MGEEVSGLSV 120 RDLQNLETQL EISLKAIRLK KHNTMTDQIT ALTAKGNQCY EENIQLHKQF NFFANEKSAL 180 GIKVYEERNA EETDGMAKAA VSLQLTQPEP LKLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-25 | 1 | 81 | 1 | 81 | MEF2C |
5f28_B | 4e-25 | 1 | 81 | 1 | 81 | MEF2C |
5f28_C | 4e-25 | 1 | 81 | 1 | 81 | MEF2C |
5f28_D | 4e-25 | 1 | 81 | 1 | 81 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007100 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021659606.1 | 1e-87 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_021659607.1 | 1e-87 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | A2RVQ5 | 6e-74 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
Swissprot | Q6EP49 | 7e-74 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2L0V298 | 3e-86 | A0A2L0V298_HEVBR; MADS-box protein (Fragment) | ||||
STRING | Lus10007100 | 1e-158 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-76 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Lus10007100 |
Publications ? help Back to Top | |||
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