PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 17973.5 Da PI: 7.2744 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lus10006960 47 FSCNYCERKFYSSQALGGHQNAH 69 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-5 | 44 | 74 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDHDDDEYHY NQVNLNLVLE PSSSSSTTSS PRGGPAADHL HHHPRVFSCN YCERKFYSSQ 60 ALGGHQNAHK LERTLAKKSR DILGGSLGRR VVGGGGWSHH MHGSSSSSTH GGIRVGVKPE 120 RHGQYRNEYG DVAEDRGTSW YVDSDRHVQE EFSHLDLSLR L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006960 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698842.1 | 8e-28 | PREDICTED: zinc finger protein 2-like | ||||
TrEMBL | A0A1U8K8L0 | 2e-26 | A0A1U8K8L0_GOSHI; zinc finger protein 2-like | ||||
STRING | Lus10006960 | 1e-115 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9619 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-23 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10006960 |