PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006604
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 719aa    MW: 78101.8 Da    PI: 5.9308
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006604genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR32.71.5e-104184441440
          TCR  14 lkkYCeCfaagkkCseeCkCedCkNke 40 
                  +k YCeCfaag++C e C+C+dC+Nk 
  Lus10006604 418 KKSYCECFAAGVYCIEPCSCQDCFNKP 444
                  599**********************96 PP
2TCR50.63.9e-16492530139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Lus10006604 492 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 530
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.482409532IPR005172CRC domain
SMARTSM011147.7E-5417446IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-6419443IPR005172CRC domain
SMARTSM011142.9E-17492533IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11494530IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MDTPQKPKAT PPALSKFEES PVFSYINSLS PIKPVKSLNI TQTFHSLSFS TLPSIFSSPH  60
ITSHHKETRF FKRHSNCPDP SRPEHSSEKK QDGGKEIAVE PQENFNQVVF IGDASVDLPK  120
SSKYDCGSPE AQQNPQQHGA STDCMSEAVG ASESVDQFTG NASQNCQPQG LGSYQTQQTK  180
DGAECDWDSL IDAADLLLFN SPTITEAFKA AHKHTIDRAS GIATSLIEAN DPTDSLNQTE  240
MGGPSTQPSD TLLPKEADSD SCMPSNSDKV HNEAASNLYR GLRRRCLDFE MVGMHTKNLT  300
YQQMQAEENN AYEDKQLVPF NCSSDSSRCI VPGMGLHLNS LARSLNTRGS TNETLSSEIS  360
LDPFNSPIIG QELLESLNIG TSDGNLDASE NNVKLAEDVS PASAYLVNEE FGLGSPKKKS  420
YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LSTRKQIESR NPLAFAPKVI RTSEPGGAET  480
GDEPMKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGSTLP  540
ETEAEQEEDT EASEKNRLET SVQQIDVPNS EEEQNHNHGL PATPLQISRP LVQLPFSSSS  600
AIKPPRSLLG ISSNGLFPGY KYGKPSIIRA QSKLEKRPFQ SSGEDEMPEI LQGEGSFSPG  660
MGMKVSSPNS KRVSPPHHNY NNNNKMGSST TSPGRKSGRK LILHSIPSFP SLTPPPLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1244652949120Protein lin-54 homolog
5fd3_B9e-1244652949120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006604
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069685.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A067KVT50.0A0A067KVT5_JATCU; Uncharacterized protein
STRINGLus100066040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-147TESMIN/TSO1-like CXC 2