PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27152.1 Da PI: 9.8322 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 2.9e-11 | 156 | 228 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lp f++ + ++k ++ +tl de+g ++ + ++ + l++GWk+F+ a++L +gD ++F+l+ +++f +v + r Lus10006483 156 LPVWFCKPN-LPK-RDEVMTLIDEEGDEYPTIY--LPRKTG--LSGGWKGFAVAHNLADGDALIFQLITSTSF--KVYITR 228 788888776.343.5568***************..555544..************************988888..666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-17 | 122 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-18 | 124 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.01E-22 | 129 | 228 | No hit | No description |
SMART | SM01019 | 3.5E-12 | 131 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-9 | 155 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.475 | 156 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVAKAKQSNY EELRLNRLEE NKKRMEALNL PMLSQSLRTT SPTPSPMKQS KPRPRVVEKQ 60 IVVVRRSSRV ANKPSPVYAE VIVERVVIPR RVSSKTRDLS NRVYASDEAR AEALEKAENL 120 QSSLESHYPS FVKSMLISHV SGGFWLAFCV DDPQGLPVWF CKPNLPKRDE VMTLIDEEGD 180 EYPTIYLPRK TGLSGGWKGF AVAHNLADGD ALIFQLITST SFKVYITRAK GSQEVSDNNN 240 I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006483 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701849.1 | 1e-116 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
Swissprot | Q9FMZ4 | 4e-80 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1U8KMB4 | 1e-115 | A0A1U8KMB4_GOSHI; B3 domain-containing protein At5g42700-like isoform X1 | ||||
STRING | Lus10006483 | 1e-179 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 8e-69 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10006483 |
Publications ? help Back to Top | |||
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