PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 501aa MW: 55340 Da PI: 5.7692 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 422.5 | 3.6e-129 | 147 | 499 | 1 | 356 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+++L++cA+avs++d+ aq+l+ +l++++s +g+p+qRl ay++e+L ar+++s+s+++kal++++ + s++ l+++++++ev+P+lkf+++ a Lus10006369 147 LKQVLVACAKAVSENDQLIAQWLIDELRNMVSVSGEPIQRLGAYMLEGLVARMSSSGSSICKALRCKDPA---SADLLSYMHILYEVCPYLKFGYMSA 241 5799*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ge+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp +RiTgv++++s + l+ +g+rL+k+A++++vpfef++ +a + ++++e+L Lus10006369 242 NGAIAEAMKGENRVHIVDFQIGQGSQWISLIQAFAARPGGPPFIRITGVDDSTSAyaRGGGLNIVGKRLSKLAKSFKVPFEFHA-AALNGCEVQVENL 338 ***************************************************998899999************************.899********** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++pgEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqea++n++ F+ rfle+l+yy+a+f+s++++l r++++ri++E+++l++ Lus10006369 339 EIRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQEANTNTAAFFPRFLETLDYYTAMFESMDVTLQRDHKDRISIEQHCLAK 436 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 ++vnv+aceg er+erhe l+kW++r+++aGF+p pls+ +++++k+ll++++++ yr+ee+ g Lus10006369 437 DVVNVIACEGGERVERHELLGKWKSRFSMAGFSPCPLSSLVNATIKTLLANYSKQ-YRLEEKAG 499 *****************************************************66.****9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.849 | 121 | 498 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-126 | 147 | 499 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MSGGLYYQPL QEFEANYMPQ FQNLAHQLCY NGSSSQATHF PFQTEQYCTL ESSSLNGTTY 60 AAIYNNFSPN GSPMSQHESP ISSSCITDDA NDIKHKLREL ETAMLGPDSD NFVMSMDGRT 120 VQEGIKIESP EIDCLREIMG AISRGELKQV LVACAKAVSE NDQLIAQWLI DELRNMVSVS 180 GEPIQRLGAY MLEGLVARMS SSGSSICKAL RCKDPASADL LSYMHILYEV CPYLKFGYMS 240 ANGAIAEAMK GENRVHIVDF QIGQGSQWIS LIQAFAARPG GPPFIRITGV DDSTSAYARG 300 GGLNIVGKRL SKLAKSFKVP FEFHAAALNG CEVQVENLEI RPGEALAVNF AFMLHHMPDE 360 SVSTENHRDR LLRLVKGLSP KVVTLVEQEA NTNTAAFFPR FLETLDYYTA MFESMDVTLQ 420 RDHKDRISIE QHCLAKDVVN VIACEGGERV ERHELLGKWK SRFSMAGFSP CPLSSLVNAT 480 IKTLLANYSK QYRLEEKAGA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-59 | 149 | 493 | 6 | 348 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006369 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021675700.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_021675701.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_021675702.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A067KCD6 | 0.0 | A0A067KCD6_JATCU; GRAS20 protein | ||||
STRING | Lus10006369 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10006369 |
Publications ? help Back to Top | |||
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