PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006368
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 507aa    MW: 55387.9 Da    PI: 6.2497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006368genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30116173260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK vkgsef rsYYrCt+++C+vkk++ers+ ++k+ +i+Y g+H+h+k
  Lus10006368 116 EDGYNWRKYGQKLVKGSEFIRSYYRCTHPNCQVKKQLERSH-EGKLADIVYFGQHDHPK 173
                  8****************************************.***************85 PP
2WRKY106.61.2e-33285343159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+vkg+++prsYYrC+s+gCpvkk+ver+++dpkvv++ YegeH+h+
  Lus10006368 285 VNDGYRWRKYGQKMVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVITSYEGEHDHD 343
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.676110174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-26111174IPR003657WRKY domain
SuperFamilySSF1182902.35E-24112174IPR003657WRKY domain
SMARTSM007746.0E-35115173IPR003657WRKY domain
PfamPF031063.1E-23116172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-36271345IPR003657WRKY domain
SuperFamilySSF1182903.27E-29278345IPR003657WRKY domain
PROSITE profilePS5081136.265280345IPR003657WRKY domain
SMARTSM007741.4E-39285344IPR003657WRKY domain
PfamPF031063.0E-26286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDSSVEGPEE LPSNETQQTK SPFDSRAEKA QQIDDDKTTH TSKSQEKTMS IVVHKGAASH  60
DLDDRDCVMQ VDKEASTPSA NRGKLSLAIP TVTGGPQPLQ SVKDGRSPAI REKVLEDGYN  120
WRKYGQKLVK GSEFIRSYYR CTHPNCQVKK QLERSHEGKL ADIVYFGQHD HPKPQSNIPL  180
TVGFVLSVEE RADQCPLSPV EKGSKGRPPI SSANASQMST LTSSEDVKAV PPESARKRDE  240
IDNDDDPQSK RQKKVNRSVE PSAVVEKPVG EPRIVVKTLS EEDIVNDGYR WRKYGQKMVK  300
GNPNPRSYYR CSSPGCPVKK HVERASHDPK VVITSYEGEH DHDMPPSRTV TNNIAGLDVR  360
TSTPASGQLD SKPACNTPDA NNKTKEQLNG ESSAKAIEGT VKEAVDKGND MVSPRSSALD  420
EMKSKNQQND KSCPKEESDA AGHDSDATTS FILEGRTNDV QHTCESKETS EENGSASASN  480
IDSVASHPDS KSTQQHISDS EAVQAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-38114346275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006368
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533869.11e-148WRKY transcription factor 1
SwissprotQ9SI372e-87WRKY1_ARATH; WRKY transcription factor 1
TrEMBLB9T6K01e-146B9T6K0_RICCO; WRKY transcription factor, putative
STRINGLus100063680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-91zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]