PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006291
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 435aa    MW: 48291.3 Da    PI: 6.0624
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006291genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072923242254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Lus10006291 292 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 324
                  69*****************************87 PP
2ELK27.66.5e-10245266122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++L+++++E++
  Lus10006291 245 ELKHELKQGYKEKLVDIREEIL 266
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.5E-2080124IPR005540KNOX1
PfamPF037905.9E-1882123IPR005540KNOX1
SMARTSM012562.3E-26133188IPR005541KNOX2
PfamPF037912.0E-18137187IPR005541KNOX2
PfamPF037892.3E-6245266IPR005539ELK domain
PROSITE profilePS5121310.144245265IPR005539ELK domain
SMARTSM011889.2E-4245266IPR005539ELK domain
PROSITE profilePS5007111.758265328IPR001356Homeobox domain
SuperFamilySSF466895.56E-16267330IPR009057Homeodomain-like
SMARTSM003894.9E-11267332IPR001356Homeobox domain
CDDcd000861.12E-11268329No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25272329IPR009057Homeodomain-like
PfamPF059201.2E-17285324IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAFQDHMSQE MGFQPALSAA GPSWLSNAVL GGSRGSDRSD NDSNTNNNNN HSNVGGGDEE  60
LIDGGGGGGG GGGIGDWERA KCKADILSHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA  120
QSQEVVAKYS VVGNGPVVDE KELDQFMTHY VLLLCSFKDQ LQQHVRVHAM EAVMACWELE  180
QALQSLTGVS PGEGTGATMS DDDDDQVDSD TNLYDASMDA MDTMGFGPLV PTETERSLME  240
RVRLELKHEL KQGYKEKLVD IREEILRKRR AGKLPGDTTS VLKSWWQSHS KWPYPTEEDK  300
ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SGSTVKSKRK KTNSSFSRPP LDDLTDHPST  360
IISLGSIVEL DVHSPTYLYP PQVYTFTRGK PQQGKSWRSQ PLRLLHISLR VLLDIQLQSL  420
KKLMEFKEVL GWGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12268331871Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321340RKRNWHSNPSGSTVKSKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081099.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-171KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2C9ULP41e-179A0A2C9ULP4_MANES; Uncharacterized protein
STRINGLus100062910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-160KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]