PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006261
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 349aa    MW: 37499.3 Da    PI: 10.071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006261genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.5e-31276333359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Lus10006261 276 DDYSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAVDDPAMLVVTYEGDHNHN 333
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-17224272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32262334IPR003657WRKY domain
PROSITE profilePS5081130.722269335IPR003657WRKY domain
SuperFamilySSF1182909.15E-27271334IPR003657WRKY domain
SMARTSM007743.6E-37274334IPR003657WRKY domain
PfamPF031061.8E-26276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAVELMINYG GNTNFVSQME EAAVQEAASG LESVNKLIRL LSQHQTTQDQ HKISNSSPSG  60
ASAAVNIETD CRAVADAAVS KFRKVISLLG RTRTGHARFR RAPVVSAAGA ANLSQQSQNE  120
VAPHQIPESK VYYATPIQQI PPAPQDFGLA VVPRERKDLS TATINFSSYS SAGNTSFVST  180
LTGETESRQQ QSSSSAAFQI TNMSQAASSA SGKRPPLSLS SSMKRKCSSE TMGSGKCASG  240
GSSGRCHCSK KSRKMRMKKV VRVPAISMKM ADIPPDDYSW RKYGQKPIKG SPYPRGYYKC  300
SSVRGCPARK HVERAVDDPA MLVVTYEGDH NHNTLSVVET TNLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212723331575Probable WRKY transcription factor 4
2lex_A1e-212723331575Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006261
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310122.11e-149probable WRKY transcription factor 7 isoform X1
SwissprotO221763e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLB9HH881e-148B9HH88_POPTR; Uncharacterized protein
STRINGLus100062610.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-66WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]