PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 476aa MW: 52655.9 Da PI: 6.633 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.8e-07 | 265 | 286 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Lus10006071 265 FCTICGKGFKRDANLRMHMRGH 286 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.21E-5 | 262 | 289 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 264 | 291 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 264 | 286 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.9E-6 | 265 | 316 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MSGFMGKLGS LAFQMWGLAR SVSEFELLVV SIVDHGCVMV RGLLHWTSPK MDPKEVLCGE 60 PWAKPSSSND PDPKISLQNV PSLMDYGFRI DQPYQDRNEN NNKAPDWDPR TMLNNLSFLE 120 QKIHQLQDVV HLIIGRKGQE VPPLGSRPDE LVTQQQQLVT ADLTSIIVQL ISTAGSLLPS 180 VKHTLTASNT IGQFEQFGPV QPKPPAGTAL VPDQTDTMMT DHNCSTEEHE MKDEEDTEDG 240 ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTPAALAKPP 300 KEATGSEPAM IKRYSCPFAG CKRNKDHKKF QPLKTILCVT NRGRCHTKKF SVIADLKTHE 360 KHCGRDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPPDE TKALFEKGED STYIEAAAAA 420 ANNKVGIGAL DFNCLGSNSN IMDFKSVLEA DDTAAATACF SQGHFQEKFH EKPKT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006071 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021647541.1 | 1e-174 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Refseq | XP_021647542.1 | 1e-174 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 1e-153 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A251MTM3 | 1e-170 | A0A251MTM3_PRUPE; Uncharacterized protein | ||||
STRING | Lus10006071 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-143 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10006071 |