PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006000
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 417aa    MW: 45247.1 Da    PI: 9.9227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006000genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.84.2e-10215234120
         GATA   1 CsnCgttkTplWRrgpdgnk 20 
                  Cs C+ttkTplWR+gp+g+k
  Lus10006000 215 CSDCNTTKTPLWRSGPQGPK 234
                  ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.3E-14209274IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-8210262No hitNo description
PROSITE profilePS501149.473213238IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-11213262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.48E-8214256No hitNo description
PfamPF003201.7E-7215234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMNSNYQYSS HQFPPFSIDL NQDHQHYLNA HYVTTAITTT TSNSPSSSSS SPLPNYHIFI  60
NPPPPAAQYS SEDTDPTTLS GGHLDYSWGL PPPAAASFHQ YQAAPQLLLQ TGITSCMYDH  120
EMVKVVDHDH HNGSLDKMEK EMSYGVVAPK LRIMNQKKKL TIKTNIKIPN NVNDVESPST  180
LQLQPAAMTD NTTTTMNTAT SSNSPTAGSP TVRVCSDCNT TKTPLWRSGP QGPKVSSSSD  240
PPPPLSLTSL CNACGIRQRK ARRAMAAAAA IADGGKTLVT PPPSTTIKLK TTSAPSSLCK  300
KSKKSNKIIG EWTNKAVKKK IRNNNLSAAQ PSSNNHLPLK KRRKFTAASR KINNTTITTT  360
TFDGVCSNNT NKVCFDDLAA IFSNSNMINS YQRVFPQDEK EAAILLMALS YGLVRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339343KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100060000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-11GATA family protein