PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005758

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HD-ZIP

Protein Properties

Length: 592aa MW: 66288.1 Da PI: 6.5164

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005758	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	55	110	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k ++t+ q++eLe+ F+++++p+ +er eL++klgL++rqVk+WFqNrR+ k Lus10005758 55 RKKHYRHTRFQIDELEKSFNECPHPDYKERLELSRKLGLETRQVKFWFQNRRTHVK 110 6788899*********************************************9766 PP
2	START	126.7	2.9e-40	171	324	62	205
HHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS START 62 veellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148 ++e +d+ +W et+ k +++evis+g g+lq m+a++q++s++vp R f+R+++++g++ w++vdvS + q++++sss+ + ++ Lus10005758 171 LKEEFDRD-RWAETFYgvvsKSSVIEVISDGvdgsknGTLQWMQADFQVISTMVPaRQERFLRFCKKHGEDIWAVVDVSFEGIQEVSSSSSFPTSMRR 267 56667788.9***99999***************************************************************9****** PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 pSg+ i++++ng+skvtwveh ++++ ++h +lr++++sg+ +g k+w++tlqr+ce Lus10005758 268 PSGCFIQDMPNGYSKVTWVEHSEYDETSIHPMLRPVISSGIGFGSKRWLSTLQRYCE 324 ******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.55E-20	38	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-20	43	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.799	52	112	IPR001356	Homeobox domain
SMART	SM00389	4.9E-19	54	116	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-17	55	110	IPR001356	Homeobox domain
CDD	cd00086	7.21E-19	55	112	No hit	No description
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
SMART	SM00234	1.1E-23	106	325	IPR002913	START domain
Pfam	PF01852	2.8E-34	171	324	IPR002913	START domain
SuperFamily	SSF55961	5.77E-18	176	324	No hit	No description
CDD	cd08875	1.08E-68	176	324	No hit	No description
PROSITE profile	PS50848	29.847	177	328	IPR002913	START domain
SuperFamily	SSF55961	1.65E-7	350	585	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MGRIIIGDQF VDVDSLMRRL NKEGEYGGNS TNFFEGSGSG DDQLDAEGHQ QSHKRKKHYR 60 HTRFQIDELE KSFNECPHPD YKERLELSRK LGLETRQVKF WFQNRRTHVK SQLEKHENIL 120 MKEENEKLRA ENEMIREGLN DPLCINCGGG NVISAMVSLE QQKLQIKNAR LKEEFDRDRW 180 AETFYGVVSK SSVIEVISDG VDGSKNGTLQ WMQADFQVIS TMVPARQERF LRFCKKHGED 240 IWAVVDVSFE GIQEVSSSSS FPTSMRRPSG CFIQDMPNGY SKVTWVEHSE YDETSIHPML 300 RPVISSGIGF GSKRWLSTLQ RYCEFLNILM ASFDMLNDPI LTKKKTVLRM AKRMVDNFCS 360 AVVSNGDEKW EKLTVNNESE GVKILARKSL TGIGEVSGFV LGASTSVWLP FSRQRLFNFL 420 NENSASWDIV TKDGKMEEIF RIPKAHAPGN NISLLRGVNL DDHTSHDANQ MAVLQESWHD 480 ASGSLVVYAP VSVASMEMVM KGGGSTSIGL LPSGYAILPD GVHQQNYPIA TTEGDGHGGV 540 VEAGGSILTI GFQILVNTLP TTNLTKESVD TVNNLLSCTI QRIKDALQKV T*

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MGRIIIGDQF VDVDSLMRRL NKEGEYGGNS TNFFEGSGSG DDQLDAEGHQ QSHKRKKHYR  60
HTRFQIDELE KSFNECPHPD YKERLELSRK LGLETRQVKF WFQNRRTHVK SQLEKHENIL  120
MKEENEKLRA ENEMIREGLN DPLCINCGGG NVISAMVSLE QQKLQIKNAR LKEEFDRDRW  180
AETFYGVVSK SSVIEVISDG VDGSKNGTLQ WMQADFQVIS TMVPARQERF LRFCKKHGED  240
IWAVVDVSFE GIQEVSSSSS FPTSMRRPSG CFIQDMPNGY SKVTWVEHSE YDETSIHPML  300
RPVISSGIGF GSKRWLSTLQ RYCEFLNILM ASFDMLNDPI LTKKKTVLRM AKRMVDNFCS  360
AVVSNGDEKW EKLTVNNESE GVKILARKSL TGIGEVSGFV LGASTSVWLP FSRQRLFNFL  420
NENSASWDIV TKDGKMEEIF RIPKAHAPGN NISLLRGVNL DDHTSHDANQ MAVLQESWHD  480
ASGSLVVYAP VSVASMEMVM KGGGSTSIGL LPSGYAILPD GVHQQNYPIA TTEGDGHGGV  540
VEAGGSILTI GFQILVNTLP TTNLTKESVD TVNNLLSCTI QRIKDALQKV T*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005758

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022765148.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X3
Swissprot	Q9M2E8	1e-136	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
STRING	Lus10005758	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-120	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Lus10005758

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]