PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HB-other | ||||||||
Protein Properties | Length: 211aa MW: 24410.9 Da PI: 8.4508 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.8 | 5e-15 | 15 | 66 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++++q+ eLe++F++++ p++e+r klgL+++qVk+WFqN+R++ k Lus10005757 15 KKNYKRHSPSQILELEKAFKECSRPDKEQRL----KLGLDTSQVKFWFQNHRTQLK 66 6788899***********************7....679**************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-14 | 9 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.84E-14 | 9 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.163 | 12 | 68 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-11 | 14 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.39E-13 | 15 | 69 | No hit | No description |
Pfam | PF00046 | 1.5E-12 | 15 | 66 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEGQSFAEEQ QHPRKKNYKR HSPSQILELE KAFKECSRPD KEQRLKLGLD TSQVKFWFQN 60 HRTQLKTQME RYETVLMSEA IEKIKVENVM LSQYLQNPLC HNCCGPEVFE LFSFGKQQLR 120 IENARLKEEI VRVCSLVKKY LGRPLLSFVL ASPYAPSNYG KYGPTTSNVD IGIDFSHPSI 180 KDVNRKMVVP PTSGEEVSSF DKSMYVDFYE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005757 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9M2E8 | 1e-42 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
STRING | Lus10005757 | 1e-156 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 3e-45 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10005757 |
Publications ? help Back to Top | |||
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