PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005740

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 280aa MW: 31484 Da PI: 5.0302

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005740	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40	8.9e-13	13	57	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg W++eEd++l ++ + G g+W+t++ g+ R +k+c++rw Lus10005740 13 RGLWSPEEDDRLRSYIVRNGHGCWTTVPINAGLQRNGKSCRLRWI 57 788*****************************************6 PP
2	Myb_DNA-binding	44.7	3.1e-14	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++ E++ ++ +++ lG++ W+ Iar ++ gRt++++k++w++yl Lus10005740 66 RGLFSANEEDTILTLHRFLGNK-WSQIARNLP-GRTDNEIKNYWHSYL 111 67899***************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-19	6	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.191	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-25	10	107	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-8	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-11	13	57	IPR001005	SANT/Myb domain
CDD	cd00167	6.46E-7	16	60	No hit	No description
PROSITE profile	PS51294	23.64	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-22	64	115	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-13	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-12	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.62E-9	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEECKDQKPK LRRGLWSPEE DDRLRSYIVR NGHGCWTTVP INAGLQRNGK SCRLRWIIYL 60 RPGLKRGLFS ANEEDTILTL HRFLGNKWSQ IARNLPGRTD NEIKNYWHSY LKRKILKPQQ 120 CASSSSLTES SSPLSRNRRE ESVPPISTVV ADQSYYNNST VGLDDYVSSR PLLPPNLMFS 180 EWLSMDGSAS TTSAAEVLFP DEGFACGSDE FSIDIPSSEF LGEHLFQGYD LNSTTMSDGS 240 GSDILSSQFD FGDRSLDGAD QFVGFYSDFH LNMDSVVYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-22	9	115	3	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005740

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX174447	0.0	JX174447.1 Linum usitatissimum clone LuBAC375N24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107436.1	1e-72	transcription factor LAF1
Refseq	XP_022734679.1	8e-73	transcription factor LAF1-like
TrEMBL	W9RWY9	2e-71	W9RWY9_9ROSA; Transcription factor LAF1
STRING	Lus10005740	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3830	31	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	2e-59	myb domain protein 18

Link Out ? help Back to Top
Phytozome	Lus10005740