PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005710
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 259aa    MW: 28709.2 Da    PI: 8.764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005710genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08166206954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Lus10005710 166 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 206
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-12159211No hitNo description
SuperFamilySSF474592.09E-14161216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6167206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERYSSSSSS TDDHQDHQTT TTMPMESMLM MMDKHHQLPV VDDYLYSFDY GGPANPTTTT  60
TTINPFTTNN NPLPSTTLSF STTSQDQQPI SWRDLMMTPE SAGNDNAVNG RGMGSNNSNN  120
KASMAAMREM IFRIAAMQPI HIDPESVKPP KRRNVKISKD PQSVAARHRR ERISEKIRIL  180
QRLVPGGTKM DTASMLDEAI HYVKFLKNQV QSLERTAPPH RPPAAGIGFP VPVTSGHWKS  240
GYNQQPPAYQ DISGYGDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102968.11e-66transcription factor HEC2-like
TrEMBLA0A2G9G6X74e-66A0A2G9G6X7_9LAMI; Uncharacterized protein
STRINGLus100057100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-45bHLH family protein