PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005677
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 415aa    MW: 45359.8 Da    PI: 6.6124
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005677genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-3974133261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++k ++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Lus10005677  74 PDKVIPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 133
                  78999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-3071131IPR003851Zinc finger, Dof-type
PfamPF027016.0E-3276132IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.52878132IPR003851Zinc finger, Dof-type
PROSITE patternPS01361080116IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGTDGGMRSS SPFCRDPAIK LFGRKIAVPD SLIQAIPPSE SNGCSNNDEK ANKEGNSPME  60
EQEQQSSSEV MKKPDKVIPC PRCNSMETKF CYFNNYNVNQ PRHFCKNCQR YWTAGGTMRN  120
VPIGAGRRKN KHLASHYRQI LVEKNPENSP PPEQPVVSCP SVVLKFGHEE VSLQQPPLCQ  180
SMQNLLNIGS EKSSLVDRSG GEEASTSENV TSRIDRDPEG DIDRSSSEDR NTTQLNPPLQ  240
CYPVTPLIVP WNWNGVAQYP NQVQLCPTSA PMLAIPPGYS PPLQFLPAAS YLMWATTTPQ  300
SCQSPTSSTS SLGKHSRDSN DEDQKAEEEK TVLVVPKTLR IDESSLWSSA AAALSPKQEQ  360
QPSSVLVSKG SIFRTFDAKL DNAKVAHVVP DSSAHILEAN PAALSRSLSF KEGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005677
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624402.11e-91cyclic dof factor 1-like
TrEMBLA0A2C9VAS03e-90A0A2C9VAS0_MANES; Uncharacterized protein
STRINGLus100056770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-55cycling DOF factor 2