PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005506
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 354aa    MW: 39126.2 Da    PI: 4.7107
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005506genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.41.6e-31149243298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lfqr+w e+Dei+lL Gl++f +k+g++p+++i ++y+fvkks+++++s sql eK  rLKkKf+kk++  k+g+++sf+k+hdqk+f+lskk+Wgs
  Lus10005506 149 LFQRIWGEDDEIALLNGLLEF-SKRGVDPFKEIADVYDFVKKSLNIDISVSQLKEKAARLKKKFTKKSNG-KDGEDKSFAKQHDQKCFDLSKKLWGS 243
                  79*******************.99******************************************9998.9***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-27150242IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVEIVDLCKR EEEEEEDEED SSTESEDEDD GASPEEKPSA QRSQAQLKKP AIQEQDDGSE  60
SEEDSDDPDT DSDSDPPPPP KTVANVKPIA SKPMEAKSSS KATTSNATAS KARKRGTETE  120
TEVKDTKRRK ESSSSAAAEK TEDSAKKQLF QRIWGEDDEI ALLNGLLEFS KRGVDPFKEI  180
ADVYDFVKKS LNIDISVSQL KEKAARLKKK FTKKSNGKDG EDKSFAKQHD QKCFDLSKKL  240
WGSEASSRAV QANNNATPKP NKKEKGNSSN GITPKRHAGV EDGAADRKKD MLPGEDIRDV  300
VIKKGLDMVE GSKRGEFEER WKDVNVATLK LFVQRDQLVV DQAKLMLAAM DED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112129RKRGTETETEVKDTKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8878193e-37HQ887819.1 Linum usitatissimum clone GMU2AYZ01AZVCG microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639583.16e-69probable transcription factor At1g11510
TrEMBLA0A067LAY01e-67A0A067LAY0_JATCU; Uncharacterized protein
STRINGLus100055060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-14DNA-binding storekeeper protein-related transcriptional regulator