PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 26690.6 Da PI: 5.0496 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 62 | 119 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D + WrKYGqK++kgs++pr+YY+C+s+ gCp++k+vers+ dp+++++tY+++Hnh+ Lus10005428 62 DSWGWRKYGQKPIKGSPYPRGYYKCSSSkGCPARKQVERSRVDPTTLVVTYSSDHNHP 119 99************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-30 | 57 | 121 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-25 | 60 | 121 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-33 | 60 | 120 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.881 | 62 | 121 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-25 | 62 | 119 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEDDEHDDNT TGSGPDNTKL ASHKPSKRGL RKKVVSIPIK EVEGVCSSGR LKGSEIASPP 60 LDSWGWRKYG QKPIKGSPYP RGYYKCSSSK GCPARKQVER SRVDPTTLVV TYSSDHNHPS 120 PPPPASLSHH HYNNPKLAAA VDQDTLPGNP EPEPDPDRER FANFEDEFSW FGEMETSSSA 180 VILDTPLLVA VDAEMSSSLD LDVFLPMREE DDESLFAGLG ELPECTSVFR HHRGMGTEVQ 240 IC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 32 | 121 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 32 | 121 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005428 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021660022.1 | 3e-81 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 2e-60 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0U1VMX9 | 5e-79 | A0A0U1VMX9_HEVBR; WRKY super family protein | ||||
STRING | Lus10005428 | 1e-179 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 3e-56 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Lus10005428 |
Publications ? help Back to Top | |||
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