PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005343
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 144aa    MW: 16468.7 Da    PI: 10.6529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005343genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-18755254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr++  +g+Wv+eIr p        +r++lg+f tae+Aa+a+++a++ + 
  Lus10005343  7 RYRGVRQRQ-WGSWVSEIRNP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                 69****999.**********7.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-31663No hitNo description
PfamPF008479.8E-12756IPR001471AP2/ERF domain
PROSITE profilePS5103220.639764IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-32763IPR001471AP2/ERF domain
SMARTSM003803.8E-37770IPR001471AP2/ERF domain
PRINTSPR003671.8E-11819IPR001471AP2/ERF domain
PRINTSPR003671.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTRPQQRYRG VRQRQWGSWV SEIRNPLLKT RIWLGTFETA EDAARAYDEA ARLMCGQRAR  60
TNFLYNPNAP QSASSKLLST NLVAKLQKCY MASLEMAEQA SFQQNQQQFQ KSTTVRVVNN  120
AVKTEELGTY NDSSRLLRRK GQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17663462ATERF1
3gcc_A2e-17663462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022730839.12e-63ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW55e-55ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4DH564e-60A0A1S4DH56_TOBAC; ethylene-responsive transcription factor ERF003-like isoform X2
STRINGLus100053431e-102(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]