PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | VOZ | ||||||||
Protein Properties | Length: 622aa MW: 69036.4 Da PI: 4.944 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 415 | 1.4e-127 | 348 | 565 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqg.sewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfd 97 pppsaflgpkcalwdc+rpaqg + +q cs fh +lalneglpgt pvlrp+gi+lkdgllfaal +k++gkevgipecegaatakspwna+elf+ Lus10005274 348 PPPSAFLGPKCALWDCARPAQGgLDFWQMCCSRFHHDLALNEGLPGTGPVLRPGGIGLKDGLLFAALGSKAEGKEVGIPECEGAATAKSPWNAPELFN 445 89******************9637999*********************************************************************** PP VOZ 98 lsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekks 195 ls+lege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei+++da+alyrlelk vd+kks Lus10005274 446 LSVLEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEITKCDACALYRLELKAVDGKKS 543 ************************************************************************************************** PP VOZ 196 akgkvskdsladlqkklgrlta 217 akgk+s+ds+a+lqk++grlta Lus10005274 544 AKGKLSNDSVAHLQKQMGRLTA 565 ********************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MGKGSKPNCK STSHRQFKDR AKNRVDDLQG IFVDLQFARK ESRNVDVAVL EEQVHQMLRE 60 WKSELNEPSP ASSLQQGASL GSFSTDICRL LQLCEEEDDA TSTLAVPKPE PNDQTLQDVD 120 SAMFPQTYGL THGQQEQCYP FVTQCKDTPS AARGVVVSSL EGTQLDCHHQ FDLPQNFEQN 180 FFIGFNGVHL FGEDGNQNVA TYLPVSWNFV CVGCLQGASL GSFSTDICRL LQLCEEEDDA 240 TSTLAVPKPE PNVQTLQDVD SAMFPQSYGF THGQQEQCYP FVTQCKDTPS AARGVVVSSL 300 EGTQLDCHHQ FDLPQNFEQN FFIGFNGVHL FGEDGNQNVA TYLPGICPPP SAFLGPKCAL 360 WDCARPAQGG LDFWQMCCSR FHHDLALNEG LPGTGPVLRP GGIGLKDGLL FAALGSKAEG 420 KEVGIPECEG AATAKSPWNA PELFNLSVLE GEMIREWLFF DKPRRAFESG NRKQRSLPDY 480 SGRGWHESRK QVMNEFGGLK RSYYMDPQPL NNFEWHLYEY EITKCDACAL YRLELKAVDG 540 KKSAKGKLSN DSVAHLQKQM GRLTAEFPTD NKRPAKGRPK MDTKLGNPYP AANRVVPTTE 600 AFEYGLGYNY LGDNIDDYFV T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005274 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091686.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_012091688.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A438IGQ0 | 0.0 | A0A438IGQ0_VITVI; Transcription factor VOZ1 | ||||
STRING | Lus10005274 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10005274 |
Publications ? help Back to Top | |||
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