PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 241aa MW: 27425 Da PI: 9.3312 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 45.6 | 1.6e-14 | 1 | 33 | 29 | 60 |
ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRreveee 60 mps++++ +++++l+CaACgCHRnFHRre+e++ Lus10005244 1 MPSPNSTpSDPTSLRCAACGCHRNFHRREPEDN 33 6777788899*******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 10.812 | 1 | 29 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-10 | 5 | 30 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-5 | 14 | 32 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.19E-16 | 109 | 183 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 109 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.1E-22 | 122 | 179 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MPSPNSTPSD PTSLRCAACG CHRNFHRREP EDNNNNNNNN QAPPPPPPQL IEYQPHHRHH 60 PLPPPMPPRR HHEQRSPNSA SPPPISSSYY PSAPRMLMAL SVENNNNNNN NVTRSDPGAS 120 SRKRHRTKFS QIQKERMYEF AERVGWKMVK SDEELVKEFC NQVKVDKGVL KVWMHNNKNT 180 FGKQQEQRVI SSHNNHHNHN HQLSNNQNNG DDLNHNSSHQ QNQNQCLFGS DNHAGSCSSS 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-18 | 122 | 180 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005244 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084702.1 | 1e-66 | zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1U7ZYG6 | 8e-60 | A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9 | ||||
STRING | Lus10005244 | 1e-175 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-34 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Lus10005244 |