PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005242
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 337aa    MW: 37561.5 Da    PI: 9.4867
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005242genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.57.7e-3473129560
  ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                   YkeC+kNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRre+e++
  Lus10005242  73 FYKECQKNHAASLGGHALDGCGEFMPSPNSTpSDPTSLRCAACGCHRNFHRREPEDN 129
                  6****************************999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2873126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-1874128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.47174125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-3174125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-26205280IPR009057Homeodomain-like
SuperFamilySSF466892.27E-16205279IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-22218275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEVAPASTPP PPPPTTTTPA AINSPFSRSP DHETEFPTQI QPAVKPLSFT NGLLKRRRLP  60
SPPSPPPPEI VSFYKECQKN HAASLGGHAL DGCGEFMPSP NSTPSDPTSL RCAACGCHRN  120
FHRREPEDNN NNNNNNQAPP PPPPQLIEYQ PHRRHHPLPP PLPPGRHHEQ RSPNSASPPP  180
ISSSYYPSVP RMLMALSGEN NNNNNNNVTR SDPGASSRKR HRTKFSQIQK ERMYEFAERV  240
GWKMVKSDEE LVKEFCNQVK VDKGVLKVWM HNNKNTFGKQ QEQRVISSHN LHHNHNHQLS  300
NNQNNGDDLN HNNSQQQSQN QRLFGSDNHA GSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-172182761775ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00536DAPTransfer from AT5G39760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005242
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084702.13e-96zinc-finger homeodomain protein 9
SwissprotQ9FIW99e-68ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBLA0A200QF085e-83A0A200QF08_9MAGN; ZF-HD homeobox protein
STRINGLus100052420.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-61homeobox protein 34
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]