PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005146
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 466aa    MW: 49439.8 Da    PI: 6.8435
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005146genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.5e-23317379163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L +eN+aLk+e+++lk+++++l+ e+
  Lus10005146 317 ERELKRERRKQSNRESARRSRLRKQAETEELARKVDALNNENMALKSEINQLKEKSDQLRVEN 379
                  89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.3E-321112IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-16145218No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-17314376No hitNo description
PfamPF001706.2E-21317379IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-21317381IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.495319382IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.13E-11320376No hitNo description
CDDcd147027.00E-22322373No hitNo description
PROSITE patternPS000360324339IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGNNEDGKSS SKSEKSSSPP HTAPPLKLCL EFLIVNLFVQ EQANIHVYPD WAAMQAYYGP  60
RVSLPPYYNS AVASGHPPHP YMWAPPQHMM PHYGAPYAAI YPGGVYAHPA VPMGQHPPGP  120
GVSASPAVAV PPSAETPTKS SGNTDQSLMK KLKGFDGLAM SIGNGNGTAE SGDGCDHRMS  180
QSVDTEGSSD GSDGNTAGGR KRSYEGRPAV GTAHSLRNSR VPVVNENVNS CLIPGAHLIL  240
TGGDLKTEGH PTDGSNSSDK DGAVTVASSR KSTTPLVVMK SSDPRTPSMT VAGNVPQPCA  300
VVPSETWLQY PAANPNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VDALNNENMA  360
LKSEINQLKE KSDQLRVENA TLVDKLKTAE LGQTREIGSN SNNAAADEQM GSADSTENLL  420
SRVNNSSAAC VEEEGNVEDH NPPKSGAKLR QLLDASPRAD AVPAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333339RRSRLRK
2333340RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021653328.11e-163common plant regulatory factor 1-like isoform X1
SwissprotP427761e-112GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A067K8C01e-158A0A067K8C0_JATCU; Uncharacterized protein
STRINGLus100051460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-111G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]