PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005143
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 471aa    MW: 52483.1 Da    PI: 5.8006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005143genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.85e-4161393128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  +G+rFhPtdeel+ +yLk k++g++  +++vi+evd+y++eP+dLp+      +++++ wyf+++ d ky+++kr+nrat+sg+Wk tgk + ++++ 
  Lus10005143   6 VGYRFHPTDEELIAHYLKLKMNGHDSLVDKVIPEVDVYRLEPSDLPNysvvGSSSDDQVWYFYCRLDYKYKNSKRANRATESGFWKVTGKPRFIVARd 103
                  7************************999999***************5465544457889***********************************9998 PP

          NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                  +ge++g+kktLvf+   +  + k+++tdWv+h+y++
  Lus10005143 104 SGEQIGVKKTLVFFykaRSGDAKPVSTDWVIHQYQA 139
                  8999********9865544556778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.1894157IPR003441NAC domain
SuperFamilySSF1019419.68E-455157IPR003441NAC domain
PfamPF023656.8E-226138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAAASVGYRF HPTDEELIAH YLKLKMNGHD SLVDKVIPEV DVYRLEPSDL PNYSVVGSSS  60
DDQVWYFYCR LDYKYKNSKR ANRATESGFW KVTGKPRFIV ARDSGEQIGV KKTLVFFYKA  120
RSGDAKPVST DWVIHQYQAT TLLPDQTEYV ICKLKNKGDC WTKNSAATTS GDPSHSTSAA  180
SDAGNHGASM QVGDSDTVVV GNSPSTIQPR LYIEDEGLSL DDFLQGDDDL FFNQPDKGPS  240
TLLRFDFDEE EEVDPDSYLV IPDDYLSNET AYAHPNDYRP EKALSTYHVE DDVKEFNVIT  300
SEVPEMYQLF AGIPQSKSTS RNNQHQLQSF VVSKDKAGEG TRESLTGAKK DLQLEGAGGM  360
EIPLIGAERP LRVMHHRQGA KKEIQLVRAG GMKIPQIGAQ RPVRVMNLRS AMKLKSATRT  420
PGKGWKVGSL IEMVEVPESH MQSPPTVYMA NILVALLAFA FFIYELPFLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-29716318174Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100051430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-40NAC transcription factor-like 9