PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10005131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 89aa MW: 10523.7 Da PI: 7.7224 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 22.9 | 1.7e-07 | 2 | 26 | 34 | 58 |
-EEEEEE-SSSTTEEEEEEES--SS CS WRKY 34 vkkkversaedpkvveitYegeHnh 58 ++k+ver++ dp+++++tY++eHn Lus10005131 2 ARKQVERNKFDPEMFVVTYTEEHNE 26 89*********************95 PP | |||||||
2 | WRKY | 49.4 | 8.9e-16 | 41 | 82 | 19 | 59 |
SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++ ++YYrC+s+ +C+v+k+ver++ dp+++++tY++eHnh+ Lus10005131 41 QNNKGYYRCSSSkTCMVRKQVERNKFDPEMFVVTYTEEHNHH 82 67899*****9989***************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 11.095 | 1 | 29 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-4 | 2 | 25 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-5 | 2 | 28 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-11 | 40 | 82 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-14 | 40 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-12 | 41 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-7 | 41 | 83 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.119 | 42 | 84 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MARKQVERNK FDPEMFVVTY TEEHNEHPPG HHNCLAGTTR QNNKGYYRCS SSKTCMVRKQ 60 VERNKFDPEM FVVTYTEEHN HHHPDHHS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10005131 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027905988.1 | 5e-16 | WRKY transcription factor 22-like | ||||
Swissprot | O04609 | 2e-15 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A4D6MME5 | 6e-15 | A0A4D6MME5_VIGUN; WRKY transcription factor 22 | ||||
STRING | Lus10005131 | 2e-60 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 6e-14 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10005131 |