PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005081
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 283aa    MW: 32965.4 Da    PI: 8.0639
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005081genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-281059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 rienk+ rqvtfskRr g+lKKA+E+SvLCda+ a+i+fs++gkl+eyss
  Lus10005081 10 RIENKISRQVTFSKRRSGLLKKAHEISVLCDAQLALIVFSTKGKLFEYSS 59
                 8***********************************************96 PP
2K-box83.35.4e-28941801599
        K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk..ekelqeenkaLrkkle 99 
                  +s++ e  kL ++ie Lqr++R+l+Ge+++++sl+eLqqLeqq++++lkk+Rs+Kn+l++e+i++lqkk  e++l+++n  L kk++
  Lus10005081  94 SSWTMECPKLMSRIEVLQRNLRNLVGEEIDPMSLRELQQLEQQIDTALKKVRSRKNQLYHESISNLQKKvqERSLNKQNGVLAKKVK 180
                  689*****************************************************************9434557888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
CDDcd002656.60E-41277No hitNo description
SuperFamilySSF554553.14E-31281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2591179IPR002487Transcription factor, K-box
PROSITE profilePS5129715.28893185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRGRVEMRR IENKISRQVT FSKRRSGLLK KAHEISVLCD AQLALIVFST KGKLFEYSSD  60
DSSMDMILER YERYSYAERN HELPITDPQQ HPGSSWTMEC PKLMSRIEVL QRNLRNLVGE  120
EIDPMSLREL QQLEQQIDTA LKKVRSRKNQ LYHESISNLQ KKVQERSLNK QNGVLAKKVK  180
QNEKEVATTG NEEQQQQQQN NEYENEPRRL ESQPMLQLPP LTIGWALLCS TYGFQARGQM  240
MNANENIEEE EEAVERQDPP TRVVTKTTTH FPAWMLPYLR DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-21175173MEF2 CHIMERA
6byy_B7e-21175173MEF2 CHIMERA
6byy_C7e-21175173MEF2 CHIMERA
6byy_D7e-21175173MEF2 CHIMERA
6bz1_A7e-21175173MEF2 CHIMERA
6bz1_B7e-21175173MEF2 CHIMERA
6bz1_C7e-21175173MEF2 CHIMERA
6bz1_D7e-21175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690842.14e-94truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotD7SMN69e-84FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2I4QQR61e-89A0A2I4QQR6_HEVBR; HbMADS-box protein
STRINGLus100050810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]