PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004968
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 715aa    MW: 81561.5 Da    PI: 5.3146
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004968genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.86.7e-1093367112373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                  + lL+ cA+avss+d++ a++lL++++ ++s++gd +qRla+yf+++L+arla+++s ++  +  + ++ + + +e l+a+++  + +P+ k+s l +
  Lus10004968 336 RGLLVLCAQAVSSSDFRTANELLKQVRRHSSETGDGTQRLAHYFANGLEARLAGNSSAISPNFfYTITSVRISAAEILKAYRTHLNSCPFKKMSILFT 433
                  6799**************************************************999999877466666666799*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I+ea++ ++++H+iDf+++ G+QWp L+q La Rp+gpp+lRiTgv+ p+ g   +e+ ee g+rL+++++++gvpfe+n+++++++e++ lee+
  Lus10004968 434 NKMIYEAAADAKTLHVIDFGVMFGFQWPILIQLLAMRPNGPPKLRITGVELPQRGfrPTERNEEAGRRLTRYCKRFGVPFEYNPIASQNWETIGLEEF 531
                  *****************************************************99*9****************************999********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellg 291
                  ++++gE++aVn+  + ++l++es +++s+r++v+ l+++++P+++v++e + ++n++ F++rf eal ++s+lfd++e +l  ++  er++ Ere+ g
  Lus10004968 532 KIRTGEVVAVNSLCRFKNLMEESFDSNSPRNAVMGLIRRMNPDIFVLTEINGSYNAPFFVTRFREALFHFSSLFDMFECTLDGKEeMERMMFEREIYG 629
                  *******************************************************************************998776599********** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  re++nvva+eg er+er et+++W+ r  +aGF+ +pl+++ ++++++ ++  + + + v+++  ++++gWk+r ++++S+W
  Lus10004968 630 REAMNVVAAEGGERVERPETYKQWQVRNVRAGFRGLPLKQELMEKVRSKMKLWYHKDFVVDQDGCWMLQGWKGRIIYATSCW 711
                  ******************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.62309692IPR005202Transcription factor GRAS
PfamPF035142.3E-106336711IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDPNNPEFSI YPNYDLQFSN SFNPPEDLDL AFTLSPGGES FIFSSTDDSP VSHPSPTTSS  60
GWNHPDSSEQ QQHQQIHHHH QNYSSPEEDD SSSSSDPVTR YISQMLMEEN MEDMPYLCYD  120
PLALRATEMS LYNVIGEPHP TPPSFDLDIS DYPAPEQGNK NPPEYHWNPP PPPVADTVGN  180
GIVKGSSSFE DMVRDMFSNE DSVLQFNRGL EEAKKFLPIA PNLVLADLDG RGNHVDEVQK  240
RSRNQERGSW EFEEEEQRNR KQSAVSYEEE GELSEMFDKV LLLPEDLTMC AAASDRHQPN  300
YCNDEKSKPR NSNGSRRKQG KTTKAARNKN ETADLRGLLV LCAQAVSSSD FRTANELLKQ  360
VRRHSSETGD GTQRLAHYFA NGLEARLAGN SSAISPNFFY TITSVRISAA EILKAYRTHL  420
NSCPFKKMSI LFTNKMIYEA AADAKTLHVI DFGVMFGFQW PILIQLLAMR PNGPPKLRIT  480
GVELPQRGFR PTERNEEAGR RLTRYCKRFG VPFEYNPIAS QNWETIGLEE FKIRTGEVVA  540
VNSLCRFKNL MEESFDSNSP RNAVMGLIRR MNPDIFVLTE INGSYNAPFF VTRFREALFH  600
FSSLFDMFEC TLDGKEEMER MMFEREIYGR EAMNVVAAEG GERVERPETY KQWQVRNVRA  660
GFRGLPLKQE LMEKVRSKMK LWYHKDFVVD QDGCWMLQGW KGRIIYATSC WVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-463397118374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622937.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLN70.0A0A2C9WLN7_MANES; Uncharacterized protein
STRINGLus100049680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]