PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10004887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 42563.9 Da PI: 8.2294 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 210 | 229 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Lus10004887 210 FACSICSKTFNRYNNMQMHM 229 78*****************9 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 294 | 316 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ Lus10004887 294 FSCRKCGKTFAVKGDWRTHEKNC 316 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.76E-5 | 206 | 233 | No hit | No description |
Pfam | PF13912 | 2.7E-4 | 210 | 229 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 210 | 229 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.45 | 210 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 210 | 232 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 212 | 232 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 257 | 289 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.23E-5 | 280 | 314 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 281 | 314 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 32 | 294 | 314 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 294 | 314 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGLRDLYHLT QTPNSTHPPT FIEWLKPSSS ISDHKHPPFL GHQQVRDHHH LMAIYLQKEE 60 DDQEEEASTK CLPLLSKLMS TQEHHKDRNF KIRDDPIKEG VDQESEAEAE DIEVTSSIPA 120 ASPTNNYSSS NNSTSSTSVE VKQEVKMFDD EEVNVALHIG LPNKNNKVLE LKEPKMVKYG 180 GNWERKSSIN RENRFWIPTP AQILVGPMQF ACSICSKTFN RYNNMQMHMW GHGSEFRKGP 240 DSLKGTQPAA MLRLPCYCCA QGCKNNINHP RAKPLKDFRT LQTHYKRKHG SKAFSCRKCG 300 KTFAVKGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIRS FGKGHSPHPS LEGFEDEKEC 360 VTSTGSDNDF TCS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10004887 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045037.1 | 1e-137 | PREDICTED: zinc finger protein WIP3 isoform X1 | ||||
Swissprot | Q9SGD1 | 1e-122 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | B9HQX3 | 1e-135 | B9HQX3_POPTR; C2H2 family protein | ||||
STRING | Lus10004887 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-122 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10004887 |
Publications ? help Back to Top | |||
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