PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004867
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 159aa    MW: 17657.7 Da    PI: 4.8075
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004867genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.11e-1310101793
        NF-YB   7 flPianvsrimkkvl....Pana.kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                  +lP a v r++k++l    P  a  i k +     e +  fi ++++ a+d c++ kr+tin++d+l al ++ f ++v+pl+  l+++++ 
  Lus10004867  10 ELPKAMVRRVVKEALsqvsPDSAfNIHKGSLLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKALEEIEFPEFVAPLRFSLAEFKKK 101
                  7999********9983333433346888888888899999**********************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-329143IPR009072Histone-fold
PfamPF008088.1E-101079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.47E-2411130IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEKVVPEVEE LPKAMVRRVV KEALSQVSPD SAFNIHKGSL LAFCESARIF IHYLSATAND  60
ICKESKRQTI NAEDVLKALE EIEFPEFVAP LRFSLAEFKK KNAGKRAAAS SQARETKKKK  120
KAEEETPSKK DGNKTKQPEE EEDADDANDT SEDDGNDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198120KKKNAGKRAAASSQARETKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004867
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447729.12e-61PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A1Q3CYN35e-61A0A1Q3CYN3_CEPFO; CBFD_NFYB_HMF domain-containing protein
STRINGLus100048671e-110(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-35nuclear factor Y, subunit B11