PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004796
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 149aa    MW: 16220 Da    PI: 6.526
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004796genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB146.65.3e-4637126997
        NF-YB   9 PianvsrimkkvlPanakiskdaketvqecvsefisfvtseasd.kcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                   ianv+rimk++lP nak+sk+aket+qecvsefisfvtseas+ kc+re+rkt+ngdd++wa+++lGf+dy+ pl+ +l++yre+eg++
  Lus10004796  37 KIANVGRIMKQILPPNAKVSKEAKETMQECVSEFISFVTSEASEkKCRRERRKTLNGDDICWAMGSLGFDDYALPLRRFLERYREVEGDT 126
                  59*****************************************846******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-4138131IPR009072Histone-fold
SuperFamilySSF471134.36E-3138138IPR009072Histone-fold
PfamPF008082.2E-2338100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.9E-176381No hitNo description
PRINTSPR006158.9E-1783101No hitNo description
PRINTSPR006158.9E-17102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MNDNINNMGA AAAAAGSSTT EDGMKAAEQE RRTTSGKIAN VGRIMKQILP PNAKVSKEAK  60
ETMQECVSEF ISFVTSEASE KKCRRERRKT LNGDDICWAM GSLGFDDYAL PLRRFLERYR  120
EVEGDTSRSA TGNFDDTGGA PHPQHSPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-36381211092Transcription factor HapC (Eurofung)
4g92_B3e-36381211092Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004796
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084241.19e-56nuclear transcription factor Y subunit B-4
SwissprotO822487e-47NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A067JYD02e-54A0A067JYD0_JATCU; Uncharacterized protein
STRINGLus100047961e-108(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-49nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]