PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004724

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 297aa MW: 33498.3 Da PI: 9.3956

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004724	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00062	8	31	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C + F+++ +L+ H+++ H Lus10004724 8 HKCKLCFRIFPTSRSLTGHMMRsH 31 79*******************997 PP
2	zf-C2H2	17	1.6e-05	189	210	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+k F+++ L++H r + Lus10004724 189 KCEKCTKQFRSSPALTTHRRIC 210 8*******************87 PP
3	zf-C2H2	13	0.0003	230	252	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Lus10004724 230 FRCPYCYKVFGSGQALGGHKRSH 252 89**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.99E-8	6	31	No hit	No description
Pfam	PF13912	0.006	8	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.04	8	31	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	10	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.99E-8	183	209	No hit	No description
PROSITE profile	PS50157	8.933	188	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	14	188	208	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.8E-4	189	209	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.53E-5	227	254	No hit	No description
PROSITE profile	PS50157	10.138	230	257	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-13	230	254	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.1	230	252	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	232	252	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEEKKKNHKC KLCFRIFPTS RSLTGHMMRS HHHQLGSGDD SSSYASESYL STEVELEEVA 60 YELRRNPRKS FRVAADPDSA ESETESPQNL NRRRSQRTRK LSEKKRQRGW VSDSPPASSV 120 SDAFPEEEVA MFLVMMSRDV NWRKRSTRFS NDDEDDAIEV REIKIAKKED EEVRERSNSR 180 VRRGINKLKC EKCTKQFRSS PALTTHRRIC SLNTDNGGAN AAAAERRRIF RCPYCYKVFG 240 SGQALGGHKR SHLSSTTGSY PSPVAQPPVK SSGGLLDLNF PPAATEDDDY SVVSDA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004724

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021690429.1	1e-59	zinc finger protein ZAT4-like
STRING	Lus10004724	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-20	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Lus10004724