PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004688
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 401aa    MW: 44758 Da    PI: 7.3688
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004688genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.61.4e-102612981954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e++ LA+++gL+ +qV++WF N R +
  Lus10004688 261 FEHflHPYPTDSEKQILAQQTGLSRTQVSNWFINARVR 298
                  554459******************************87 PP
2BELL78.87.7e-26140208472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+++k + L+ +l+eV+krY+ y+eq++ v++sFeavaglg+a+p++  A k +S+hF +Lk+a+ +qi
  Lus10004688 140 EHRRKNSNLMLMLHEVYKRYRLYCEQMKSVVASFEAVAGLGNAAPFIPNAIKIVSFHFTSLKNALLHQI 208
                  899***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.4E-2580206IPR006563POX domain
PfamPF075261.4E-2686204IPR006563POX domain
PROSITE profilePS5007112.131239302IPR001356Homeobox domain
SMARTSM003896.8E-10241306IPR001356Homeobox domain
CDDcd000861.28E-12242303No hitNo description
SuperFamilySSF466893.59E-18244308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27246306IPR009057Homeodomain-like
PfamPF059202.0E-18259298IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGDNPSEASF FNSLSSNHPR TKPNPFPNRH HSFPITSPSI IMNNNSSHCN NSPLQQQQQG  60
ALSLSLSFAA PVVLPLGPFT GYATILDTSR FLRPAQLILD DLFGFVNSHP PSHHHTPADH  120
DHDHDEEEAS MFGTQLEGFE HRRKNSNLML MLHEVYKRYR LYCEQMKSVV ASFEAVAGLG  180
NAAPFIPNAI KIVSFHFTSL KNALLHQIHC FKDQSDSVYS QSNNNIKPFS TTTFNLKQHP  240
VWRSHKMLPD HAVSLLKSWL FEHFLHPYPT DSEKQILAQQ TGLSRTQVSN WFINARVRVW  300
KPMVEEIHSL ESEQKAAVAS SSSLASIGNK RTRFSSEQEE DHCGYSSSDG VSLALALPPR  360
THVPISNPSW HFPVNAAANP SVGNHEFAGG ISSNQFYGHH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16247306463Homeobox protein Meis2
3k2a_B2e-16247306463Homeobox protein Meis2
4xrm_A2e-16244306163Homeobox protein Meis2
4xrm_B2e-16244306163Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036837.12e-96PREDICTED: BEL1-like homeodomain protein 9
TrEMBLB9HT492e-94B9HT49_POPTR; Uncharacterized protein
STRINGLus100046880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-63TALE family protein