PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004659
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 440aa    MW: 49103.6 Da    PI: 8.2197
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004659genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054375397123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k+F++   L  H r+H
  Lus10004659 375 HECPFCSKVFRSGQALGGHKRSH 397
                  78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-5231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.18E-6333No hitNo description
PfamPF139120.0029826IPR007087Zinc finger, C2H2
SMARTSM003550.37830IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058835IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM003550.07692114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.47392119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-893114No hitNo description
PfamPF139121.1E-694115IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-8370397No hitNo description
PfamPF139122.2E-11374397IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723375397IPR007087Zinc finger, C2H2
SMARTSM003550.018375397IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
METNQKKFVC KFCNKRYPCG KSLGGHIRIH QNGNYSPSAN HHYLPPEDDH HHKKDSSSAD  60
GYILRENPKK TRRFETNLAA NNNNSTNGNL IQVCKECGKG FQSLKALCGH MACHSRNYSF  120
DEDRSDDTSE KLMMEDDLVL MDDQNSDTET SAAPSKRRRS KRMMRYKNIG DTNVHSSSAS  180
IASDLEQDNQ EEVALCLMML SKDASLKGFN VSSVAADSSD NNSVVTKMRM KVMKNNEKND  240
KNSSSCYDDE ENSFMEMKVA RKKHQVVISS DNDQNSDSGY FNYGPKKVEE PEVVSFHEKK  300
PAKPVIAISK TNNYHKRARE SSENIYESGE NSFETETTKT ITKKVNNGKN HQPPAKSNNK  360
LSANAAATAK KAKVHECPFC SKVFRSGQAL GGHKRSHFVG GAEDTTVVLK QQVAEIPMID  420
LNLPAPVDHE EQATGFVTW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624190.12e-96uncharacterized protein LOC110623518
TrEMBLA0A2C9WHN75e-95A0A2C9WHN7_MANES; Uncharacterized protein
STRINGLus100046590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-33C2H2-like zinc finger protein