PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004637
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23891.2 Da    PI: 8.6105
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004637genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.25.7e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+ KKA+E+SvLCdaeva+i+fs++gkl+ey++
  Lus10004637  9 KRIENKINRQVTFSKRRAGLHKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                 79***********************************************86 PP
2K-box95.11.1e-3177173399
        K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +++ +++e   + ++  e+++Lk++ie L r++Rh++GedL+s+s keLq+LeqqL+++lk+iR+++n+l++e+i  lq+kek++qe+n  L k+ e
  Lus10004637  77 ERQLVATELDSQGNWLMEYNRLKAKIELLLRNHRHYMGEDLDSMSTKELQNLEQQLDSALKNIRTRRNQLMHESITALQRKEKAIQEQNDVLAKQEE 173
                  56666666677899*****************************************************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.777161IPR002100Transcription factor, MADS-box
CDDcd002656.49E-42279No hitNo description
SuperFamilySSF554553.4E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-2786171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.06188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLHK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYSYAERQL VATELDSQGN WLMEYNRLKA KIELLLRNHR HYMGEDLDSM  120
STKELQNLEQ QLDSALKNIR TRRNQLMHES ITALQRKEKA IQEQNDVLAK QEEHHHQGHD  180
ARGRNDLDLT LEPIYSCNLG CFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22174173MEF2 CHIMERA
6byy_B3e-22174173MEF2 CHIMERA
6byy_C3e-22174173MEF2 CHIMERA
6byy_D3e-22174173MEF2 CHIMERA
6bz1_A3e-22174173MEF2 CHIMERA
6bz1_B3e-22174173MEF2 CHIMERA
6bz1_C3e-22174173MEF2 CHIMERA
6bz1_D3e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004637
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold shock (e.g. from 22/17 to 16/12 degrees Celsius in light/night respectively). {ECO:0000269|PubMed:18332227}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623236.11e-114truncated transcription factor CAULIFLOWER A
SwissprotB4YPW61e-111AP1A_BRAOA; Floral homeotic protein APETALA 1 A
SwissprotQ8GTF51e-111AP1A_BRAOB; Floral homeotic protein APETALA 1 A
SwissprotQ963561e-1112AP1_BRAOT; Floral homeotic protein APETALA 1-2
TrEMBLA0A061EAI91e-113A0A061EAI9_THECC; K-box region and MADS-box transcription factor family protein
STRINGLus100046371e-150(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-111MIKC_MADS family protein