PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004612
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 310aa    MW: 34048.1 Da    PI: 6.8345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004612genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.5e-32146203259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+ver+ edp++ ++tYeg+Hnh+
  Lus10004612 146 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERAIEDPSTEITTYEGQHNHP 203
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-34130205IPR003657WRKY domain
SuperFamilySSF1182902.22E-29137205IPR003657WRKY domain
PROSITE profilePS5081131.709140205IPR003657WRKY domain
SMARTSM007741.8E-38145204IPR003657WRKY domain
PfamPF031068.2E-26146203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSDHHQLYYH HDSSPSAAFF PYGQPTMVVD DDPPYYNNLS FTDCLHGSVD YSSLSKAFDL  60
SPPPAADHHV GNNNNGPLTP NSSGSFSSEE DSGSICNGKK SSETAATATG EENKAAAGEK  120
KAGKGEKRKK EARFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCGVKK  180
RVERAIEDPS TEITTYEGQH NHPLPSTLRG NAAAAAAMFS HSILSTPNSA TFPAEFLLHM  240
SGQNHQSSAA AATSSAALGS MYHHQQQQNF GQQQQQQQQQ QYYGQHLSDY GLLQDVVPNS  300
MFFKQEESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-31135206778Probable WRKY transcription factor 4
2lex_A9e-31135206778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519733.12e-77probable WRKY transcription factor 28
TrEMBLA0A2P2QM743e-83A0A2P2QM74_RHIMU; WRKY transcription factor
STRINGLus100046120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-47WRKY DNA-binding protein 71