PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004531
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 391aa    MW: 43883 Da    PI: 4.5281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004531genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.61.3e-15141671128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...v.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknra......... 77 
                  lp+G+ F+Pt+e+lv++yL ++++g +l+ +    v +  +d+y + ePw+L +++++       + +++y  +k ++k + ++ k+++         
  Lus10004531  14 LPVGCCFKPTEEQLVSHYLFNHISGLPLQNHPfcpVpVFFCDLYGSeEPWELWHRFQSqnssglsTGDDVYLITKLKQKVSGKQLKQKKkmagisnkq 111
                  799************************655333334355669998768****75443322233323447799999888887555444434789***** PP

          NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         t+ g W  + kd ++ + ++e vg++k + +  +r++k ++  W++ ey++
  Lus10004531 112 yydrlvgTSGGNWDRSDKDYKLEVDRDEFVGIRKKFSYK-NRESK-QHGLWLLSEYSI 167
                  *******9****************99***********98.44444.799*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-1411175IPR003441NAC domain
PROSITE profilePS5100517.09414186IPR003441NAC domain
PfamPF023656.3E-1015167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGPNNQSSQT ADLLPVGCCF KPTEEQLVSH YLFNHISGLP LQNHPFCPVP VFFCDLYGSE  60
EPWELWHRFQ SQNSSGLSTG DDVYLITKLK QKVSGKQLKQ KKKMAGISNK QYYDRLVGTS  120
GGNWDRSDKD YKLEVDRDEF VGIRKKFSYK NRESKQHGLW LLSEYSISYD GGKTCSEDVI  180
CILKDYRKSD ESATTKKRKF EQVNTTATEL PSSSSKVPKL DDGATSSATL MQMQTEEMVP  240
ISFDFSMPSA PNVLDGSSLG DIIHNNELLP TIPSHHSVDN TSGFESGQLD INDIYIDDES  300
IWALLEDDKQ EPENSGLLEQ LQSPVIKPVH QVPLDLDLPV TCFSSNPSDI FLDDEFIQRI  360
SSPSYIPCSL ASDFGLEINP FSDFHDPFQF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004531
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8857101e-180HQ885710.1 Linum usitatissimum clone Contig1615 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100045310.0(Linum usitatissimum)