PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004497
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 474aa    MW: 51606.8 Da    PI: 9.6696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004497genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05100122123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Lus10004497 100 FVCEICSKGFQRDQNLQLHRRGH 122
                  89*******************88 PP
2zf-C2H212.20.00057177199123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +++
  Lus10004497 177 WKCEKCSKKYAVQSDWKAHSKSC 199
                  58*****************9987 PP
3zf-C2H211.30.0011207225523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Lus10004497 207 DCGTVFSRRDSFITHRAFC 225
                  9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-799122No hitNo description
Gene3DG3DSA:3.30.160.606.5E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887100122IPR007087Zinc finger, C2H2
SMARTSM003550.036100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM0035534142172IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4165197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-7172197No hitNo description
SMARTSM00355140177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSNIIKGGIF GGDEDGQQQL ILASQQEEVA THHHHHHLIS SIANYSTTTT SNSNGSITTI  60
TTTQPAPHLT KKKRNLPGNP DPKAEVIALS PKTLMAKNRF VCEICSKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RNKDEVIRKK VYVCPEPGCV HNNPARALGD LTGIKKHFSR KHGEKRWKCE  180
KCSKKYAVQS DWKAHSKSCG TKEYKCDCGT VFSRRDSFIT HRAFCDALAE ETKASAGIIV  240
NHSTRQSVAN YQITLNTTTT NKPTIPDHQL FSPTPPETTT SSKLNHFISL PLPPPPTTTS  300
TTLSSSLHLS TTPFFASSSA SMSATALLQK AAQMGSTLSS CHPTTPFPST TTSSSPTANS  360
MQLFMRGGDP YSNDSSQLLF SNQLFHEGFM NGNFPGSPSF VNGSVNNSNK NNSNNANASA  420
AALWKSFGGV DNGGMTTTVD FLGVNNGETT SSTSRVTRNM DMVLTRFDDE PLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33173231361Zinc finger protein JACKDAW
5b3h_F2e-33173231361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128139KQRNKDEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004497
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036840.11e-122PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ8H1F51e-112IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB9H5861e-120B9H586_POPTR; C2H2 family protein
STRINGLus100044970.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]