PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004489
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 1014aa    MW: 112957 Da    PI: 9.5385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004489genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09119151337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      +W+  E +++++a +++G++ Wk++a+++g +R+ 
      Lus10004489 119 PWSDTEIQKFYKAYRRHGKD-WKRVAAEVG-TRSV 151
                      8*****************99.*********.**96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.79E-9115163IPR009057Homeodomain-like
PROSITE profilePS5129310.131115168IPR017884SANT domain
SMARTSM007172.6E-4116164IPR001005SANT/Myb domain
PfamPF002492.4E-8119151IPR001005SANT/Myb domain
CDDcd001675.27E-6119152No hitNo description
Gene3DG3DSA:1.10.10.601.0E-4119151IPR009057Homeodomain-like
SMARTSM011352.7E-48621722IPR033471DIRP domain
PfamPF065841.1E-30621721IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MVVDPMQLLA LNPPYRLNDV YYITKQIIPA LQRVFGLVGA DLNRWFSEMP RPARGSLAKH  60
RPQFAPNQYR TRIDFYYLSQ HCLICGDCEK CWENEAAVAT AMIGRTSKKR KSTYKLGPPW  120
SDTEIQKFYK AYRRHGKDWK RVAAEVGTRS VEIVEALYNL HRAYLSLPEG TASVHGLIAM  180
LSDHYSVHQA PRGREAEDSG MPLVPHKSLK RKRVKVSMSE PADRSVSTST DGCLSLLKRV  240
RLLGGQPRVV GKRTPRFPVG HSSTRDNQRN HGFQNRKSDL ASKEEQVLSP LYKDVLFIPL  300
LFFMHSGSSR EKLRDARSKG SNNPAAYDGD ASLRDVDCVD FADICKKGKK ILGKKMKVGV  360
TERKKLDDSE GQFCGLSQNV DTKVVKGKVK VTSPNGESSS KKLLSGDEFS ALDALQTLAH  420
LSAMESESSD QLKEEKTIVG DEIASIPQTT CVSHGTTEIP PMKEALPDMV TRVQATTSKN  480
SKTGRITSVD ARPDTEAKQR NGPSNGNTLK RKRQSSVSRA LKVEAETKSP VTDSVTTKDF  540
PEVKLPAKEE QTSEVSAPSG QLKTCFDNSD DQTNVVKSQA SSPLPSRTSE RKSKARVSNP  600
KEEFPCFLSP KLRRWSRFEW FCSAIDYPWF AKREFVEYLN HVGLGHIITL TRVEWGVIRS  660
SLGKPRRFSQ HFLQDERGKL QQYRESVRKH YSELRTGIRK GLPTDLARPL YVGQRVNAIH  720
PQSRELYTGR VLTVDHDECR VQFDHPNIGV ELVKDIDCMP FDQMENMPEA LKKLKHFDVS  780
KDVQINRHPD TRRLASGTGP SPGNARLNQA QVVCSEALNT RQCHTQPANQ GLHWLNLGNS  840
SLFAAMEDTP YQGSFASQEL GSAVVEIVQK SRQQAHKMVD AALQALSSEK EGASQGADAF  900
ATIMEALDGV DTTTRGLPEP RQQVTDGNDS AESHSNSSAA SSSPSELMTS CVATFLMIKM  960
FTERQYPPSD VAQMIDSAVT NLRPSCSQNL PIYREIQTCM GRIKTQILAL VPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004489
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570603.10.0protein ALWAYS EARLY 2 isoform X5
STRINGLus100044890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-80DNA binding