PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004377
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36235.8 Da    PI: 9.3123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004377genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-19153207256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k q  +Le+ F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Lus10004377 153 RKKLRLSKGQAAVLEDSFKEHHTLNPKQKSALAKQLGLRPRQVEVWFQNRRARTK 207
                  778899***********************************************98 PP
2HD-ZIP_I/II128.52.7e-41153242191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk q+++LE+sF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Lus10004377 153 RKKLRLSKGQAAVLEDSFKEHHTLNPKQKSALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 242
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.9E-151121IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.7E-19135203IPR009057Homeodomain-like
SuperFamilySSF466891.09E-18136210IPR009057Homeodomain-like
PROSITE profilePS5007117.265149209IPR001356Homeobox domain
SMARTSM003891.1E-16151213IPR001356Homeobox domain
PfamPF000461.3E-16153207IPR001356Homeobox domain
CDDcd000861.04E-15153210No hitNo description
PRINTSPR000311.0E-5180189IPR000047Helix-turn-helix motif
PROSITE patternPS000270184207IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5189205IPR000047Helix-turn-helix motif
CDDcd146860.00248202241No hitNo description
SMARTSM003404.2E-27209252IPR003106Leucine zipper, homeobox-associated
PfamPF021832.6E-11209243IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAEKQDLRLS LSLATTTSFP VHHSDLQLKP PPPSSWIDTN LILNPSSDPE PYIKCLCRSD  60
FRTHKIFPPG YRRQPAPTHR RRIAAPRPPP PAAEDYEEEA GVSSPNSTIS SVSGNKRSER  120
DEPLGSSDPD ADPASSGRAG AGNSDDDDGD TSRKKLRLSK GQAAVLEDSF KEHHTLNPKQ  180
KSALAKQLGL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKR CCENLTEENR RLQKEVQELR  240
ALKLSPQFYM QMTPPTTLTM CPSCERVGVP PSTSSSSAPT SAQQPPLVAH PSFMGLAHQH  300
RPMPHVNPWA AASSTAHAPL NLLRPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157SRKKLRL
2201209RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004377
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297040.0EU829704.1 Linum usitatissimum clone LU0006E12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639155.11e-111homeobox-leucine zipper protein HAT4-like
SwissprotP466011e-86HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A067L7241e-109A0A067L724_JATCU; Uncharacterized protein
STRINGLus100043770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-72homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]