PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004338

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 327aa MW: 37707.3 Da PI: 7.0287

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004338	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136	2.5e-42	7	113	1	106
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++k+++l +vikevd+yk+ePwdL++ k+ ++++ ewyfFs++dkky+tg+r+nratksg+Wkatg+dk++++ Lus10004338 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKEVDLYKIEPWDLQElcKIGTDDQsEWYFFSHKDKKYPTGTRTNRATKSGFWKATGRDKSIYC- 102 69**************************.9***********954566665555**********************************. PP NAM 96 kgelvglkktL 106 +++lvg++ktL Lus10004338 103 RQSLVGMRKTL 113 899*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-43	5	125	IPR003441	NAC domain
PROSITE profile	PS51005	36.755	7	159	IPR003441	NAC domain
Pfam	PF02365	1.6E-19	8	113	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDSSSKVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK EVDLYKIEPW DLQELCKIGT 60 DDQSEWYFFS HKDKKYPTGT RTNRATKSGF WKATGRDKSI YCRQSLVGMR KTLEEGWVVC 120 RVFKKKLPTT MRRLGDQYDS PITWYNDQAS LVLQELDSPS AISHHHPYPS LPPSRLLLQQ 180 QQQDYLHCKQ ELDQLQHNHV HRRPEPSFLQ LPQLESPTVP TSTANGNTSY SSMVPSYRPC 240 EHNLSSTPHA STLNETTTDW RVMDKFVASQ LIMSHELVIA SGSHDEMNSN NFSSTTTSSS 300 SFDDQHQVVQ ECASMLTFRR EIDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-35	2	113	10	118	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004338

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087129.1	1e-108	NAC domain-containing protein 7
Swissprot	F4HYV5	1e-100	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	A0A2K2BWB2	1e-106	A0A2K2BWB2_POPTR; Uncharacterized protein
STRING	Lus10004338	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	3e-97	Arabidopsis NAC domain containing protein 26

Link Out ? help Back to Top
Phytozome	Lus10004338

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]