PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004316
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 256aa    MW: 27713.4 Da    PI: 10.1598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004316genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009290112123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C  C+ksFs+   L  H  +H
  Lus10004316  90 FNCVVCSKSFSSYQALGGHKASH 112
                  78**********99999998887 PP
2zf-C2H210.60.0018145156112
                  EEETTTTEEESS CS
      zf-C2H2   1 ykCpdCgksFsr 12 
                  ++C++C+ksF++
  Lus10004316 145 HECSICHKSFPT 156
                  78********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3990112IPR007087Zinc finger, C2H2
PfamPF139122.5E-1290114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-590112No hitNo description
SMARTSM003550.3390112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-5140166No hitNo description
PfamPF139121.9E-10144169IPR007087Zinc finger, C2H2
SMARTSM0035559145167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEALPSPTSA TLLPSFQFQE FNLNPLAKRK RSKRSSQHNP PTEEEYLALC LLMLARGSFS  60
SPNFHFSNPP RSTSPPIATS YQYHNLSSSF NCVVCSKSFS SYQALGGHKA SHRKSALVDQ  120
QPLPPTSTTT TIATLTNSTM NDKAHECSIC HKSFPTGQAL GGPKRCHYDS AADKSRVIIA  180
STSGTGSERV GSTTTNSSGS RMMQSHRRRL IDLNLPALPQ LAGDEEVTSP LPTISKKHRL  240
TLMLLMPTNT AAKAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601831.11e-61zinc finger protein ZAT10-like
TrEMBLA0A2C9U0J13e-60A0A2C9U0J1_MANES; Uncharacterized protein
STRINGLus100043160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-37salt tolerance zinc finger