PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004226
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 387aa    MW: 43336.6 Da    PI: 6.8046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004226genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3924.5e-2937153199
                  EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                  f+k ltpsdv+k++rlv+pk++ae++               ++++ +s+ l++edes   + W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+
  Lus10004226  37 FEKPLTPSDVGKLNRLVIPKQYAERYfpmdhqqqqlagaggESSSSSSTVLSFEDESEagKCWKFRYSYWTSSQSYVLTKGWSRFVKEKRLDAGDVVL 134
                  99***************************99999999987755566899999*9965555************************************** PP

                  EEE-.SSSEE..EEEEE-S CS
           B3  82 Fkld.grsefelvvkvfrk 99 
                  F++  ++++ +l+++++++
  Lus10004226 135 FERGvKDHRDRLFIGWRKR 153
                  **77466888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-3830158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-2833146IPR015300DNA-binding pseudobarrel domain
CDDcd100178.78E-2635137No hitNo description
SMARTSM010192.0E-2237154IPR003340B3 DNA binding domain
PROSITE profilePS5086314.08537154IPR003340B3 DNA binding domain
PfamPF023626.3E-2637153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSRLPSYPWP PSTAATAAAD DSSPSSLNTF IDKEPMFEKP LTPSDVGKLN RLVIPKQYAE  60
RYFPMDHQQQ QLAGAGGESS SSSSTVLSFE DESEAGKCWK FRYSYWTSSQ SYVLTKGWSR  120
FVKEKRLDAG DVVLFERGVK DHRDRLFIGW RKRGTNAVTA TNVISNEGYG AVGDYANRHY  180
IQQGGGAAAA QPYLEDGGGG AGQGEGEGER VATEGSFNRR LRLFGVNMEW QPENEDTDNQ  240
PSPSATTDYP MSTSSTSGGG SRLHHPQNYS SLPNYNHXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXIRIGK LKFVST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-43321533113B3 domain-containing transcription factor NGA1
5os9_B6e-43321533113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553608.11e-59B3 domain-containing protein At2g36080
RefseqXP_028218899.11e-59B3 domain-containing protein At2g36080-like
TrEMBLA0A445FIT93e-58A0A445FIT9_GLYSO; B3 domain-containing protein
TrEMBLK7MZA23e-58K7MZA2_SOYBN; Uncharacterized protein
STRINGLus100042260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.26e-53B3 family protein