PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004183
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 392aa    MW: 41888.3 Da    PI: 8.913
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004183genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07187210427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C+ +     Ck+Gd+C+FaHg+
  Lus10004183 187 RMCNKYNSAEGCKFGDKCHFAHGE 210
                  66888888888***********96 PP
2zf-CCCH33.19.4e-11356380126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt++C++f + GtC++G rC+FaHg
  Lus10004183 356 YKTKICDNFTK-GTCSFGQRCHFAHG 380
                  9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.8112139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.033112140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6114137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-13180213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-7180214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427183211IPR000571Zinc finger, CCCH-type
SMARTSM003560.43185210IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15251332IPR004088K Homology domain, type 1
SMARTSM003224.3E-12258328IPR004087K Homology domain
PROSITE profilePS5008414.173259323IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.1E-16259329IPR004088K Homology domain, type 1
PfamPF000131.6E-10261325IPR004088K Homology domain, type 1
CDDcd001057.00E-14261324No hitNo description
Gene3DG3DSA:4.10.1000.105.0E-15351386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8354385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399355382IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7355381IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8356380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MASASCQPTG GDNVNKDEEE EMTEVPEDQK RRGRKLTGDE EIKHGIGEKL FLFYVPVGVQ  60
TSLRVVGLLS FLDLNCTMDA RKRARPDGAV NKYNGGFKKS RPEMDPLSTA VGSKSKPCTK  120
FFSTAGCPFG DGCHFQHYVP GGYNAVSQIM NRSSSATPTL KQIMNMPPPP QSVSNGAAAN  180
PPAIKNRMCN KYNSAEGCKF GDKCHFAHGE WELGRTVAPS HDNHLRMTGG PGPLPGRNMN  240
RMDQPPPPAA PPLVGFGDTA TAKISVDASL AGPIIGKGGV NSKQICRQTG AKLSIRDHET  300
NPNLRNIELE GTFDQIAQAS AMVKEVIANI VTIGGGGQAA RPSSFSGDKH HPGSNYKTKI  360
CDNFTKGTCS FGQRCHFAHG DTELRKNTST G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744450.0JX174445.1 Linum usitatissimum clone LuBAC364K11, complete sequence.
GenBankKX0345580.0KX034558.1 Linum usitatissimum clone 28C5_FAD2B_M5791_Scaffold155 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623416.11e-138zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-99C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A165G0Z20.0A0A165G0Z2_LINUS; Kh domain containing RNA binding protein-nucleic acid binding, RNA binding, zinc ion binding
STRINGLus100041830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-84C3H family protein