PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003847
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 337aa    MW: 38392.6 Da    PI: 4.854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003847genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.38.1e-46341601128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  +ppGfrF P+d+elvv+yLkkkv g++l++ + i e+++yk++P +  +++++ +e ewyfF++rd+ky++g+r+nra+ +gyWkatg dk++++ k+
  Lus10003847  34 VPPGFRFCPRDDELVVHYLKKKVLGEPLPM-NKILEANLYKFDPDTVSATYEGtGEGEWYFFTPRDRKYPNGDRPNRAAGNGYWKATGADKKMVV-KN 129
                  69****************************.77**************9655552556**************************************.89 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +vgl+k Lv+y g+ pkg+k++W+mhey+l
  Lus10003847 130 VAVGLRKALVYYYGKPPKGVKSNWIMHEYKL 160
                  99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5433191IPR003441NAC domain
PROSITE profilePS5100553.22934191IPR003441NAC domain
PfamPF023655.8E-2635160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELDDQETFV IKNEGGTDDY ADVEDHHHEV VDLVPPGFRF CPRDDELVVH YLKKKVLGEP  60
LPMNKILEAN LYKFDPDTVS ATYEGTGEGE WYFFTPRDRK YPNGDRPNRA AGNGYWKATG  120
ADKKMVVKNV AVGLRKALVY YYGKPPKGVK SNWIMHEYKL ADSSVQSTRT QRTDKSDMRL  180
DDYILCRIYR KSERARNFRY TGYDEEARDL LRQEDSPTAA ATSPSTSSLI INPTDQTPSF  240
HHHPPPPPPQ QQLPTALPWQ YNNALGVPSN NPLEQQSITY MNNYVNDHYE DLGRDWSALD  300
LDSLARCFNG DNEYVPPLPV DDGMDYGIID PNSFNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-553419215169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546854.11e-68PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A2G2VNX32e-67A0A2G2VNX3_CAPBA; NAC transcription factor
STRINGLus100038470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-61NAC domain containing protein 25