PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003772
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 270aa    MW: 30123.6 Da    PI: 8.0121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003772genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.41.3e-1031269106374
         GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                  ++ e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+ +A++++vpfef+  v    +++++e+L+++pgEa
  Lus10003772   1 MKDENRIHIIDFQIAQGTQWITLIQALAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGKRLTMLAQQCKVPFEFRS-VGVPASEIQVENLKIQPGEA 97 
                  6789****************************************998899999************************.7999**************** PP

         GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                  +aVn++l lh+++desv ++++rd++L+lvk+lsPkv  +veqe+++n+++Fl+rf+++l yysa+f+s+++ lpre++eri+vE+++l+re+vn++a
  Lus10003772  98 IAVNFALVLHHMPDESVGTQNHRDRLLRLVKGLSPKVAALVEQESNTNTAPFLARFVDTLTYYSAIFESIDVALPREHKERINVEQHCLAREVVNIIA 195
                  ************************************************************************************************** PP

         GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  cegaer+erhe l+kWr+r+ +aGFkp+pls+++++++++ll +++s+ y++ee++g+l+lgW+dr Lvs +aW+
  Lus10003772 196 CEGAERVERHELLGKWRSRFAMAGFKPYPLSSYVNATIRTLLGNYSSK-YTLEEKDGALYLGWMDRHLVSSCAWK 269
                  **********************************************88.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.4E-1011269IPR005202Transcription factor GRAS
PROSITE profilePS5098554.3681250IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKDENRIHII DFQIAQGTQW ITLIQALAAR PGGPPHIRIT GIDDSTSAYA RGGGLDIVGK  60
RLTMLAQQCK VPFEFRSVGV PASEIQVENL KIQPGEAIAV NFALVLHHMP DESVGTQNHR  120
DRLLRLVKGL SPKVAALVEQ ESNTNTAPFL ARFVDTLTYY SAIFESIDVA LPREHKERIN  180
VEQHCLAREV VNIIACEGAE RVERHELLGK WRSRFAMAGF KPYPLSSYVN ATIRTLLGNY  240
SSKYTLEEKD GALYLGWMDR HLVSSCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-545269109375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638010.11e-169scarecrow-like protein 21
RefseqXP_021638011.11e-169scarecrow-like protein 21
SwissprotQ9LDL71e-153PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2C9W9F41e-167A0A2C9W9F4_MANES; Uncharacterized protein
STRINGLus100037720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-156GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]