PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003769
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 599aa    MW: 64961.9 Da    PI: 7.6251
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003769genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31235292260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Lus10003769 235 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGQITEIIYKGTHDHPK 292
                  8****************************************.***************85 PP
2WRKY106.21.7e-33435493159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Lus10003769 435 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 493
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-27229293IPR003657WRKY domain
PROSITE profilePS5081122.848229293IPR003657WRKY domain
SuperFamilySSF1182906.67E-25230293IPR003657WRKY domain
SMARTSM007741.1E-32234292IPR003657WRKY domain
PfamPF031067.8E-24235291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37420495IPR003657WRKY domain
SuperFamilySSF1182902.22E-29427495IPR003657WRKY domain
PROSITE profilePS5081138.825430495IPR003657WRKY domain
SMARTSM007743.1E-39435494IPR003657WRKY domain
PfamPF031063.6E-26436493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
METTSSTTSS STPDASDSND FRLPAPPASA CDSSDHRPGT CAAAGGARYK LMSPAKIPIS  60
RSPCITIPPG LSPTSFLESP VLLSNIKAEP SPTTGSFMKP LAAHSSFLST PYSAPAVSSD  120
TFGQRGSSFF EFRPPSIANM TSADMNNQRT DQSVRIQGTS QSQFQPFSSL SSPKSEMIAS  180
SNELSLTPRH LVSSEGTGPA DIETDESNQI GNSNSGIQAS QYDLKGGTVN SATSDDGYNW  240
RKYGQKHVKG SEFPRSYYKC THPNCEVKKL FERSYDGQIT EIIYKGTHDH PKPLPSRRYT  300
AGTLLSVQEE RSDKILSGRD GKEKPLNPIY LDFCTSPALK VLFSHLLHSK WAFDLNVEKS  360
SGAYSQLSNT SEPNGTPDLS PVTAIDDIPE GTEEDDDPLS KRRRMDIGSF DVTPVVKPIR  420
EPRVVVQTLS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK  480
AVITTYEGKH NHDVPAAKNS SHDAAANAMN GPSRFRSNES DRLSLDLGVG RGSAAEHGQS  540
SRSSLSKVAN YYGILNGGIN QYLSSRQAPS EGRIVELEAP NHSSYPYPPN VGRLLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37235496878Probable WRKY transcription factor 4
2lex_A3e-37235496878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003769
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070967.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-180WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM9TMC30.0M9TMC3_JATCU; WRKY transcription factor 09
STRINGLus100037690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein