PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 25028.6 Da PI: 6.8528 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lus10003681 94 FSCNYCRRKFYSSQALGGHQNAH 116 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.77E-6 | 91 | 121 | No hit | No description |
PROSITE profile | PS50157 | 11.136 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLQLNLQLVI CASTVMHQLN SRSDSEENQC ESSNQVATSG ISPQEEPFPA DPISLDLSLQ 60 LLQSHYESNE SDHHHEQSNY DETSATRTVP PRVFSCNYCR RKFYSSQALG GHQNAHKRER 120 IIAKRAVRMG YAFSRYNMSL GIQAHSASHI LPLQRPPLPP FDHGFGARFE QRFYEEEEEV 180 GSYWPGSFRQ FANRRPNYTT RSDVATSSSS SSSGPDLTLK L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003681 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q39266 | 1e-29 | ZFP7_ARATH; Zinc finger protein 7 | ||||
TrEMBL | A0A2P2KAK7 | 2e-40 | A0A2P2KAK7_RHIMU; Zinc finger protein 4-like | ||||
STRING | Lus10003681 | 1e-164 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 6e-30 | zinc finger protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10003681 |
Publications ? help Back to Top | |||
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