PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003548

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 981aa MW: 110457 Da PI: 6.97

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003548	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.5	5.6e-32	12	108	1	95
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.lel.eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL kk+++++ +++ + ++ ++d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat sgyWkatgk+++ ++ Lus10003548 12 LPPGFRFYPSDEELVCHYLLKKISDDHnNQVlHGTLVQIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATISGYWKATGKERTGGEN 108 79*******************999853441445***********88888999******************************9986664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-32	10	104	IPR003441	NAC domain
PROSITE profile	PS51005	36.791	12	191	IPR003441	NAC domain
Pfam	PF02365	7.4E-16	13	110	IPR003441	NAC domain
SMART	SM00545	2.2E-17	414	455	IPR003349	JmjN domain
PROSITE profile	PS51183	16.945	415	456	IPR003349	JmjN domain
Pfam	PF02375	2.7E-13	416	449	IPR003349	JmjN domain
SuperFamily	SSF51197	1.26E-16	607	798	No hit	No description
PROSITE profile	PS51184	25.538	611	775	IPR003347	JmjC domain
SMART	SM00558	2.2E-28	611	775	IPR003347	JmjC domain
Pfam	PF02373	3.5E-27	642	758	IPR003347	JmjC domain
Pfam	PF02928	2.6E-8	820	857	IPR004198	Zinc finger, C5HC2-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MITGLRDIGA SLPPGFRFYP SDEELVCHYL LKKISDDHNN QVLHGTLVQI DLHTCEPWQL 60 PEVAKLNATE WYFFSFRDRK YATGYRTNRA TISGYWKATG KERTGGENKK KKSDGGGPIH 120 QGNSWDEKDA CFLQEQSSQR HQNWVDHARV PPRVPSHASQ RFSLVDDDGQ RRTPDLKPEM 180 EDWVLCRVFH KSKTSEEEEY NDINKFSPPP YHLVDTTTTH NYHHTPPPIL TANLHPSSLT 240 AHNHHPLLPG LANSLSSSTI TAAAPPRQQS SGVLLPAGGG SSLLNILEDN SNNNHSEISS 300 SSYGSLNRLR SQLGVASSTS FKLRKVDQRL SSLASVVDAA MLKSFLIQRP WIIHDQSDGD 360 QIREESNSEQ VDKEHSSKTC LPKGVVRGCP DCRDCLKVTA RWQPDKGKKQ LLEDAPVFHP 420 TEEEFKDTLK YIVNVPPGAE PYGICRIVPP PSWHPPCMIS KKSVWEDSRF ESLVQRIDGS 480 LDQSSDDVSD CSVMEGFEPE PGPQFSLKTF KRYSDDFVSQ YFTIDEVLNP KMGSNMHVKR 540 REPSVEDIEG EYRRIIESPT EEMEACEGEI SLRLYVFLVI CCDNLDSHVF GSGFPSRNQF 600 SENDSNQGYV NSGWNLKNTA VLPDSLLSFE NPSTSRLLQP RLRIGMCFSS LPWKNAEHHL 660 YSLSYMHLGS PKIWYAVPGS HGSVFEGTIK KYHSGLGRKY SKTRHYRRLL KLTPTMLKSE 720 GIPVYRCVQN PGEFVLVLPR SHYSYFDSGF NCGVSINFAP LGWLPNGQNV VEFYSEQARK 780 TSLSQDKLLI GAAGEAVRVH DMERRFREGW DLSESSRPAS CSCNPDRYSC LIHAKQLCSC 840 PWSRRLFLYR YVMDELRVLL EAVGGNLTAI YKWARDDLNL SLHSLVSDKR PKRSDGKECN 900 TEESKEEIIE QLYGGQSSTA SDIKEELRAR MLQQKSMNEK KLMKGKASVP PVPITSQSSS 960 VADTVPVLEV SSDSSSESCS *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MITGLRDIGA SLPPGFRFYP SDEELVCHYL LKKISDDHNN QVLHGTLVQI DLHTCEPWQL  60
PEVAKLNATE WYFFSFRDRK YATGYRTNRA TISGYWKATG KERTGGENKK KKSDGGGPIH  120
QGNSWDEKDA CFLQEQSSQR HQNWVDHARV PPRVPSHASQ RFSLVDDDGQ RRTPDLKPEM  180
EDWVLCRVFH KSKTSEEEEY NDINKFSPPP YHLVDTTTTH NYHHTPPPIL TANLHPSSLT  240
AHNHHPLLPG LANSLSSSTI TAAAPPRQQS SGVLLPAGGG SSLLNILEDN SNNNHSEISS  300
SSYGSLNRLR SQLGVASSTS FKLRKVDQRL SSLASVVDAA MLKSFLIQRP WIIHDQSDGD  360
QIREESNSEQ VDKEHSSKTC LPKGVVRGCP DCRDCLKVTA RWQPDKGKKQ LLEDAPVFHP  420
TEEEFKDTLK YIVNVPPGAE PYGICRIVPP PSWHPPCMIS KKSVWEDSRF ESLVQRIDGS  480
LDQSSDDVSD CSVMEGFEPE PGPQFSLKTF KRYSDDFVSQ YFTIDEVLNP KMGSNMHVKR  540
REPSVEDIEG EYRRIIESPT EEMEACEGEI SLRLYVFLVI CCDNLDSHVF GSGFPSRNQF  600
SENDSNQGYV NSGWNLKNTA VLPDSLLSFE NPSTSRLLQP RLRIGMCFSS LPWKNAEHHL  660
YSLSYMHLGS PKIWYAVPGS HGSVFEGTIK KYHSGLGRKY SKTRHYRRLL KLTPTMLKSE  720
GIPVYRCVQN PGEFVLVLPR SHYSYFDSGF NCGVSINFAP LGWLPNGQNV VEFYSEQARK  780
TSLSQDKLLI GAAGEAVRVH DMERRFREGW DLSESSRPAS CSCNPDRYSC LIHAKQLCSC  840
PWSRRLFLYR YVMDELRVLL EAVGGNLTAI YKWARDDLNL SLHSLVSDKR PKRSDGKECN  900
TEESKEEIIE QLYGGQSSTA SDIKEELRAR MLQQKSMNEK KLMKGKASVP PVPITSQSSS  960
VADTVPVLEV SSDSSSESCS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ykn_A	1e-112	397	874	5	553	Probable lysine-specific demethylase JMJ14
5yko_A	1e-112	397	874	5	553	Probable lysine-specific demethylase JMJ14
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May function as histone H3 lysine demethylase and be involved in regulation of gene expression. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003548

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006386222.2	0.0	putative lysine-specific demethylase JMJ16 isoform X1
Refseq	XP_024451281.1	0.0	putative lysine-specific demethylase JMJ16 isoform X1
Swissprot	C0SUT9	1e-140	JMJ16_ARATH; Putative lysine-specific demethylase JMJ16
TrEMBL	A0A2K2BD10	0.0	A0A2K2BD10_POPTR; Uncharacterized protein
STRING	Lus10003548	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	5e-49	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Lus10003548

Publications ? help Back to Top
Yang W,Jiang D,Jiang J,He Y A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis. Plant J., 2010. 62(4): p. 663-73 [PMID:20202164]